Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01850 ATGGAGCAATTCAGCAACGACGATCTCGAATACGTAAACGACAACTACTTCGAATTCTCTGATTTCGAAGACGACGAAACCTTCTCCACCAATCTTCCTCACTCTAACTCAGATTCCGCTACTCCAGACTCTGACTCCGACTCCGAAGACGATTTCGATACGAGCAATGCCAAGACTGATACTTCTTCTTTGGAAGCAAGAAACGGGAAGGATATTCAGGGGATTCCATGGGAGATGCTTAATTATACCAGAGATGAATACCGTGAGACGCGTTTGAAACAGTATAAGAATTACGAGAGCCTCACGCGCTCTCATGAGGAGCTTGATAAGGAATGTTTGGAAGTGCAGAAAGGGAAATCTTTCTATGATTTTCAGTTCAATACCAGGCTGGTTAAATCAACAATTGTACACTTTCAGCTGAGGAATCTGTTGTGGGCAACATCGAAGCATGATGTATACCTTATGCAAAACTACTCCGTGATGCATTGGTCCTCTTTACTGCGAAGGGGTCAAGAAGTCATGAATGTGGCCAAACCGATTATTCCAACCCTTCAGAAGCATTCTGGATTAGCCCACCCTATCTCGCGAGTGCAAATTAGCACCATGGCTGTTAAGGAGAACCTGATGGTGGCAGGTGGTTTCCACGGCGAGCTTATTTGCAAGAATTTGAATCATTCTGGAGTTGCATTCTGCAGTAAAATAACTACAGATGATAATGCTATAACCAATGCTGTGGATGTCTTCCGTAACCCCAGTGGGTCATTGAGGGTCATTGCAGCAAATAATGATTCCCAAATTCGGGTTTTTGATTCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCCGTCAATAATGCTTCTGTTAGTCCGGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTACTGAGGGCTTGATAGCCGATGCTAACACGGGGAAGATAGCTGGAAACCTAAAAGGACACTTGGACTATTCTTTCTCGTCTGCTTGGCACCCGAACGGACAAATATTGGCTACTGGGAATCAGGACAGAACATGCAGGTTGTGGGACATAAGAAATCTTTCGCAGTCCTTAGCAGTCTTAAAGGGAAGAATAGGTGCAATAAGAGGCTTAAGATTCACATCAGATGGACGGTTTTTGGCCATGGCTGAGCCAGCAGACTTCGTCCATATTTTCGATTCACAATCTGGTTACACACATGGTCAAGAGATAGATATATTTGGTGAGATTGCTGGTATATCTTTTAGCCCTGACACAGAGGCTCTGTTTGTCGGCGTTGCTGATCGAATGTACGGTAGTTTGTTAGAGTTCACCAGAAAACATAATTATCAGTATCTAGACTCAATGCTTTAA 1362 0.4354 MEQFSNDDLEYVNDNYFEFSDFEDDETFSTNLPHSNSDSATPDSDSDSEDDFDTSNAKTDTSSLEARNGKDIQGIPWEMLNYTRDEYRETRLKQYKNYESLTRSHEELDKECLEVQKGKSFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRRGQEVMNVAKPIIPTLQKHSGLAHPISRVQISTMAVKENLMVAGGFHGELICKNLNHSGVAFCSKITTDDNAITNAVDVFRNPSGSLRVIAANNDSQIRVFDSENFASLGCFKYDWSVNNASVSPDGKLLAVLGDSTEGLIADANTGKIAGNLKGHLDYSFSSAWHPNGQILATGNQDRTCRLWDIRNLSQSLAVLKGRIGAIRGLRFTSDGRFLAMAEPADFVHIFDSQSGYTHGQEIDIFGEIAGISFSPDTEALFVGVADRMYGSLLEFTRKHNYQYLDSML 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01850 453 SUPERFAMILY WD40 repeat-like 183 432 IPR036322 GO:0005515
Vifa2g01850 453 SMART WD40_4 314 353 IPR001680 GO:0005515
Vifa2g01850 453 SMART WD40_4 357 396 IPR001680 GO:0005515
Vifa2g01850 453 SMART WD40_4 215 270 IPR001680 GO:0005515
Vifa2g01850 453 ProSitePatterns Trp-Asp (WD) repeats signature. 340 354 IPR019775 -
Vifa2g01850 453 Gene3D - 174 435 IPR015943 GO:0005515
Vifa2g01850 453 FunFam WD-40 repeat family protein 234 450 - -
Vifa2g01850 453 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 450 - -
Vifa2g01850 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 356 - -
Vifa2g01850 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 362 IPR001680 GO:0005515
Vifa2g01850 453 MobiDBLite consensus disorder prediction 27 67 - -
Vifa2g01850 453 Pfam WD domain, G-beta repeat 320 353 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01850 Vifa-Chr2 480878950 480883469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01850 299 432 Miscellaneous Gene Families AT5G08390 28.966 6.60e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01850 - - mtr:25489425 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01850 2 480878950 480883469 Vifa2g01850 2 480878950 480883469 ECH