Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01822 ATGGAAGAAAGTTTAGATTTCATCGACATCAAGCTTTCTCCGGCGAAGCTCCCACTCGATCTTCCTCGAGATCCGCCGACGAAATCTCCGCCGATGAAATCTCACCGCCGTCTCCGGCGACGAGGCGACACGTGGGTAGTGTCAGTGATGGTAATAATCCACATAGGATTTTTCATTACCACGATGCTCGTCAACGATTGCTTCACAAATTCTCACGGTGATTGCACTTTTCCATCTCTTGGAAGGTTATCGTTTCAGCTTCTCTCTGAAAATCCACTGTTAGGTCCTTCCATGTCCAAGTTGGATGAAATGGGAGCTCTTCGAAAGAACTTTTTGACGGAACGTCATCAAACTTGGCGTCTTTTCACGTTTCCATTTTTGCATGCTGGACTCTTCCATCTGGTTATCAATCTCTGCAGTGTGATCTATGTTGGAATTCGCCTAGAGCAGGAGTTTGGGCCATTCAGGGTTGGTATAATCTATATACTATCTGCTTTTGTGGGTGCCTTAGTGGCTTCACTTTTTCTTCAAAGTATCCCTTCTGTTGGTTCTTCTGGTGCTTTATTTGGATTACTAGGAACATTGCTTTCAGAATTAGTTTGGAACTGGAAATTTCATACCAATAAGGTTTCTGAAATAGCATCATTAGTCTTTGTTTTTGTGTGCAACTTCTTCCTTGGTTTTCTGCCATATGTAGACAATTTTTCAAGCATGGGAGGTTTTATATCAGGATTCCTTCTTGGAACTGTTCTTTTATTCACCCCTCAGCTCCAACAAGTAGCTCCAAATAAAGGAGATGGAATTGATTATGATCTCAAAAGTTACATCAAGCTAAAGTTCAAGCAAAAGCTAGACAGACCAGTTACTAGAATTGTTTCTCTTATCCTCTTCACCCTGTTATTGGCTGGTTGTCTTCTTGCAGTTCTTTATGGAATCAACATCAACAGTTATTGCACATGGTGTCCGTATGTTGACTGTATCCCTTTCACAAGCTGGCATTGCAAAGACAAAGAAACCTTTTGTGAGACAATGGTGAGTAATGCTCACTTGACGATGACATGTTTGGGGAATGGCAACTTTAAGGTCTATCATTACACCAATATTTCTCGAGCAAGGATTAATGATTTGTGCTATATGATATGTTGA 1146 0.4119 MEESLDFIDIKLSPAKLPLDLPRDPPTKSPPMKSHRRLRRRGDTWVVSVMVIIHIGFFITTMLVNDCFTNSHGDCTFPSLGRLSFQLLSENPLLGPSMSKLDEMGALRKNFLTERHQTWRLFTFPFLHAGLFHLVINLCSVIYVGIRLEQEFGPFRVGIIYILSAFVGALVASLFLQSIPSVGSSGALFGLLGTLLSELVWNWKFHTNKVSEIASLVFVFVCNFFLGFLPYVDNFSSMGGFISGFLLGTVLLFTPQLQQVAPNKGDGIDYDLKSYIKLKFKQKLDRPVTRIVSLILFTLLLAGCLLAVLYGININSYCTWCPYVDCIPFTSWHCKDKETFCETMVSNAHLTMTCLGNGNFKVYHYTNISRARINDLCYMIC 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01822 381 Pfam Rhomboid family 114 252 IPR022764 GO:0004252|GO:0016020
Vifa2g01822 381 Gene3D - 40 254 IPR035952 -
Vifa2g01822 381 PANTHER RHOMBOID-RELATED 29 334 IPR002610 GO:0004252|GO:0006508|GO:0016020
Vifa2g01822 381 SUPERFAMILY Rhomboid-like 42 256 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01822 Vifa-Chr2 473156917 473159290 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01822 - - gmx:100793747 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01822 2 473156917 473159290 Vifa2g01822 2 473156917 473159290 ECH