Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01820 ATGGATGCTAGTGCGGGTTTATCTCTCGGGTTGAATGCTTCTTCGCAATCGCCATCTCATACTGGTTCATCATCTGCTTCACTCACTGATAGCTCTTTTTCGTTACATTTGAATTCCAATTCGAACTCTTCTATGTCATGGCGTTTACTTCAGGAGAAACAAAACAATGTTGTTGTTGTTGTTAAGAAACAAGAATTGGAAGAGGAAGATGATGATGGAGTTGTTGATGGTGAAAAAAGTGAAACTATTGACTTTATGGGTAGACCTATGTGTGTGAAGAGGAAAATTGAGGGGTATAATCAACCGGAGCAGCAGAGTTTTGCGTTGAAACGTGTTGCAACGGCGGTGGATTCTAAGGCTTCTGTGAGTTGGGGGAATCAGCCACTGAGTGTTGCTGATCCTGAGATATTCATGATCATGGAGAATGAGAAGTTGAGACAGTTTAAAGGGATTGAGTTGATTGCTTCTGAGAATTTTGTGTGCAGGGCGGTGATGGAAGCGCTTGGTAGTCATTTGACTAATAAATACTCTGAGGGAATGCCGGGTGCGAAATACTATACTGGGAATCAGTACATTGATCAGCTTGAGTTTCTTTGTTGTGAACGTGCATTGAAGGCTTTTGATCTTGATCCGAGTATATGGGGTGTTAATGTTCAGCCTTATTCATGTACTTCTGCTAATTTTGCTGTTTATACTGGTCTTTTGAATCCGGGTGATAGGATTATGGGTTTGGATTCACCTTCTGGTGGACATTTGAGTCATGGTTTTTATACTCATGGTGGGAAGAAGGTTTCTGCGGCTTCTATATTTTTTGAGACTTTGTCTTATAAAGTTAATCCTTTGACTGGTTACATTGATTATGAAAAACTTGAGGAGAAAGCAGCGGATTATAGACCTAAAATACTTATCTGTGGGGGTAGTTCTTATCCCAGAGAATGGGATTATGGAAGGTTTAGGAAGATTGCTGATAAATGTGGAGCTGTTTTGATGTGTGACATGGCTCATATTAGTGGCCTTGTTGCTGCTAAGGAAGTTGCTTGTCCATTTGATTACTGTGATATTGTTACCTCAACAACCCACAAAAGTCTTCGAGGTCCAAGAGGAGGCATCGTCTTTTACAGAAGAGGAACAAAACCATCGAAGAAATGTTTTGTTCTTAATCACTGGGATAATAATAGTACTTATGATTTTGAGGAGAAGATAAACTTTGCTTTATATCCATCGTTACAAGGAGGTCCCCACAATAATCACATTGCTGCTCTTGCCATAGCTTTGAAACAAGTTGCTACCCCAGAGTATAAAGCATACATGCAGCAGGTTAAAAGAAATGCACAGGCATTAGCAACTGCATTGTTGAAAAGAAAATGCAGATTGGTAACGGATGGGACTGACAATCATCTTTTGCTCTGGGATATAACTGCACTCGGCTTAATTGACAGAAACTATGAGAAGGTCTGCGAGGCGTGTCACATCACTCTCAATAAGTGTGCTATTTATGGTTCTATTTCTTCTGGAGGAGTGAGAATTGGTACTCCTGCAATGACATCACGAGGATGTTTAGAGGATGATTTTGACACCATAGCCGATTTTCTTCTGAGGGCAGCTCAGATTACCAGCATTATACAGAGGGAACATGGTAAATCATGCAAGGATTTTCTCAAGGGTCTTCAGAATAATAAAGATATTTTTGACCTCAGAAATCGTGTTGAGACATTTGGTTCCCAGTTTGAAATGCCAGGATTCAATATTTGA 1752 0.4018 MDASAGLSLGLNASSQSPSHTGSSSASLTDSSFSLHLNSNSNSSMSWRLLQEKQNNVVVVVKKQELEEEDDDGVVDGEKSETIDFMGRPMCVKRKIEGYNQPEQQSFALKRVATAVDSKASVSWGNQPLSVADPEIFMIMENEKLRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQLEFLCCERALKAFDLDPSIWGVNVQPYSCTSANFAVYTGLLNPGDRIMGLDSPSGGHLSHGFYTHGGKKVSAASIFFETLSYKVNPLTGYIDYEKLEEKAADYRPKILICGGSSYPREWDYGRFRKIADKCGAVLMCDMAHISGLVAAKEVACPFDYCDIVTSTTHKSLRGPRGGIVFYRRGTKPSKKCFVLNHWDNNSTYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKRNAQALATALLKRKCRLVTDGTDNHLLLWDITALGLIDRNYEKVCEACHITLNKCAIYGSISSGGVRIGTPAMTSRGCLEDDFDTIADFLLRAAQITSIIQREHGKSCKDFLKGLQNNKDIFDLRNRVETFGSQFEMPGFNI 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01820 583 Hamap Serine hydroxymethyltransferase [glyA]. 128 580 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vifa2g01820 583 MobiDBLite consensus disorder prediction 1 31 - -
Vifa2g01820 583 SUPERFAMILY PLP-dependent transferases 125 581 IPR015424 -
Vifa2g01820 583 CDD SHMT 133 538 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vifa2g01820 583 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 353 369 IPR019798 GO:0030170
Vifa2g01820 583 Gene3D - 158 438 IPR015421 GO:0003824
Vifa2g01820 583 MobiDBLite consensus disorder prediction 8 31 - -
Vifa2g01820 583 Gene3D Aspartate Aminotransferase, domain 1 133 579 IPR015422 GO:0003824
Vifa2g01820 583 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 120 582 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vifa2g01820 583 FunFam Serine hydroxymethyltransferase 158 376 - -
Vifa2g01820 583 Pfam Serine hydroxymethyltransferase 130 530 IPR039429 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01820 Vifa-Chr2 472588083 472592321 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01820 K00600 - gmx:100776419 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01820 2 472588083 472592321 Vifa2g01820 2 472588083 472592321 ECH