Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01819 ATGGCTATTTCTCTCTCGAATCAATTTCTATTAGGTTCTTGTTCATGTTCTTCTTCCACTCGATATTCTTCCAAATCTCGTCAACAACCCAAATTCGCACGCTTCCCATCTCGCCCCCTTTTCGCCTCCAACACTATCTTAGGGTTTCCAACCCCCTTTTCCTCCCCCCACCGAACCTCACTCTTCGCTTCTTCCCAAATAAATAACGAAACAGAAGAGATTCAAATTGATGAAGATCGAAAAACTTTACCCAGCTTAACGGTTCTTATTGAATCATACAAGAAAGCTTTTGTTACCGGCAATGAAAAGATTGCATCGCAGATTGAAGAAAGTATACAATTGAAGGAGAATGAAAAGAATAAATTGGTTCAGAAAGTGTCTACTTTATCTGTTGATAAAGTTTCGGTTAAGGAGCAATATCTTCGGTTACAAGCGGATTTTGATAACTTTAGGAAAAGATGTGACAAAGAAAGAATTGGCGTTCAATCTGATGCTCAACTGGGATTTATTAAGAAACTTTTGTTGATGGCGGATAGTTTCGAGACAGTTAAACGACAAATTGACGTGGCGACGGAGAAGGAGAAGAAGATTGATGTGAGTTATCAGAGTATTTATAAGCAGTTTGTTGAGACTTTGAGGAGTCATCATGTTTCTGTCATAGCAACAGCTGGCAAGCCTTTTAATCCCTTGCTTCATGAAGCCATCGCACGTGAGGAGTCCAAAGTGGTCAAGGAAGGGATTATAATTAAAGAATCCCGACGAGGTTTTGTGCTTAAAGATAAGGTTTTAAGGCCAGCGTTTGTGAAGGTTTCCTTAGGTCCTGGGAATAAGAAATCTTCAGTGGCACCTGCCAAACCCTTGGAGCAGCCTTCAACAGCAGCTAGAATTGATGAAAGATAA 900 0.4033 MAISLSNQFLLGSCSCSSSTRYSSKSRQQPKFARFPSRPLFASNTILGFPTPFSSPHRTSLFASSQINNETEEIQIDEDRKTLPSLTVLIESYKKAFVTGNEKIASQIEESIQLKENEKNKLVQKVSTLSVDKVSVKEQYLRLQADFDNFRKRCDKERIGVQSDAQLGFIKKLLLMADSFETVKRQIDVATEKEKKIDVSYQSIYKQFVETLRSHHVSVIATAGKPFNPLLHEAIAREESKVVKEGIIIKESRRGFVLKDKVLRPAFVKVSLGPGNKKSSVAPAKPLEQPSTAARIDER 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01819 299 Hamap Protein GrpE [grpE]. 69 272 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vifa2g01819 299 Coils Coil 105 125 - -
Vifa2g01819 299 CDD GrpE 137 270 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vifa2g01819 299 FunFam Protein GrpE 216 271 - -
Vifa2g01819 299 PRINTS GrpE protein signature 224 239 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vifa2g01819 299 PRINTS GrpE protein signature 141 157 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vifa2g01819 299 PRINTS GrpE protein signature 251 270 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vifa2g01819 299 PRINTS GrpE protein signature 169 184 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vifa2g01819 299 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 218 272 IPR009012 GO:0006457
Vifa2g01819 299 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 121 215 IPR013805 -
Vifa2g01819 299 ProSitePatterns grpE protein signature. 227 270 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vifa2g01819 299 Gene3D - 99 213 IPR013805 -
Vifa2g01819 299 Gene3D Head domain of nucleotide exchange factor GrpE 217 271 IPR009012 GO:0006457
Vifa2g01819 299 Pfam GrpE 109 271 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vifa2g01819 299 PANTHER GRPE PROTEIN 78 277 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vifa2g01819 299 MobiDBLite consensus disorder prediction 272 299 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01819 K03687 - gmx:100809893 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01819 2 471984063 471986244 Vifa2g01819 2 471984063 471986244 ECH