Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01798 ATGCATCCTTTCTGCTGTGTATCCGCTATCTCCGATCAGGCCTCGCCGGTGAAACCCTCGCCGTCTCCTTTTCCTGACTTCACCATGCCGCCGCCTCCTCAACCGCCAGCGGTGGTTACTCTTAGATCCGACTCGGTTCCGAGACATAGTCTGAGCCAGAGTGTCGGGAGCCAGCGGGAGTCGCCGGCGGTGGTTCTCGATGTGAAAATTAATGATCTCGTCGGAAATGGAATCTCCGGGATTCTGTATAAGTGGGTGAATTACGGGAAAGGATGGAGACCGCGATGGTTTGTACTTCAAGACGGCGTTCTGTCCTACTATAAAATTCACGGTCCTGATAAAATCATCGTTAACCAAGAGACTGAGAAAGGTTCGAAGGTTATCGGTGATGAATCTATTCGGAGGATCAATCGCAATCGCAATTCTCGTCCCTATCAGAACCGTCGAAAGCCCTTTGGTGAAATCCATCTCAAGGTTTCAACGATTCGGGAGAGTAAATCAGATGATAAGCGATTTTCAGTGTTCACGGGAATGAAGAGACTCCACTTGAGAGCAGAGTCACGAGAAGATCGTGTGGCGTGGATGGAGGCTTTGCAAGCTGTGAAAGATATGTTTCCTCGAATTTCCAACAGTGAATTGATGGCTCCTGTGGACAACGTAACAATTTCAACTGAGAAACTGAGAAATCGGCTTCTGGAAGAAGGACTGGGTGAAGCAGCTATTCTAGACAGTGAACAAATTATGAGAACTGAATTTGCAGCGTTACAAAATCAACTAATGTTGCTTAAGCAGAAACACTCCATCCTCATTGATACCTTACGCCACTTAGAGACGGACAAGGTTGATCTGGAGAATACAGTAGTTGATGAGAGCCAAAGACAGTGGAATGATCAAGAAAATTCCAATGGATTAATGCTAGAAAAGTTTAGTGATGGAAGTGCAAGTGAATCTGAGGATGATAATGAAAGAAATGATGCTGCAGAAGAAGAAACAGATGAAGATGACAATGTCTTTTTTGATACCCGTGATATTCTATCATCAAGTTCTTTTAAAAGTAACGGGTCTGATTATAGAGTATCATCTTTCTCTTCTGATAATGATACCTTTGAATCAGAGGAAGATGTAAATTCTTCAAATAAATATATTGGAACCAACCATCCTCATGTTAAGAGGCGAAAGAAATTGCCAGACCCTGTAGAGAAAGAGAAAGGAGTCAGTCTTTGGTCAATGATCAAGGATAATATAGGGAAAGATCTAACAAAAGTTTGCCTGCCTGTTTACTTTAATGAGCCTCTCTCCTCCCTGCAAAAGTGTTTTGAAGAAATGGAGTATTCATATCTGCTGGACCAAGCATATGAATGGGGAAAAAGGGGTGATAGCCTCATGAGAATTCTCTATGTCGCAGCTTTTGCTGTATCTGCCTATGCTTCAACAGAAGGAAGAATTTGCAAACCATTTAATCCATTACTTGGGGAAACATATGAAGCTAATTATCCAGATAAAGGCCTTCGTTTTTTCTCAGAGAAGGTCAGCCATCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTCGGGGGATAGCAACTTAAAAAGCAAATTTTGGGGCCGATCGATTCAGCTTGACCCTGTTGGTATTTTGACTCTGGAATTTGAGGATGGAGAGGTTTTCCAGTGGAGCAAGGTTACGACATCAATATACAATCTCATATTGGGAAAGCTTTACTGTGATCATTATGGTACAATGCGTATAGAGGGAAATCAAGAGTACTCTTGTAAGCTGAAGTTCAAGGAACAGTCTATAATTGATCGAAATCCTCATCAGGTTCATGGTATAGTCCAAGATAGGAACGGAAAAACAGTATCAACCTTGTTTGGAAAATGGGATGAAAGCATGCACTATGTTAATGGAGACTATACTGGGAAGGGGAAAGGTCATGAATCTTTGTCAGAGGCCCGTTTACTCTGGAAGCGAAGTAAGGCTCCCATGTTTCCTACTAGATATAACTTCACACGCTTTGCCATCACGTTAAATGAACTTACCCCTGGATTGAAGGAAAAGTTGCCGCCTACAGATTCCAGGTTAAGACCAGACCAGAGGTATTTAGAAAATGGGGAGTATGAGATGGCAAATTCAGAAAAGTTGCGGCTAGAGCAGCAACAACGGCAGGCCCGGAAGATGCAAGAAAGCGGCTGGAAACCACGGTGGTTTGCTAAGGATAAAGCAAGCGGGACATACCGCTATATGGGAGGGTATTGGGAGGCTCGAGAAAAAAGAAACTGGGACTCCTGTCCTGACATCTTTGGCCAAATTTCTCCTGATCATCTTTCAGATGAAATTCAAATCACATCTTAA 2367 0.4305 MHPFCCVSAISDQASPVKPSPSPFPDFTMPPPPQPPAVVTLRSDSVPRHSLSQSVGSQRESPAVVLDVKINDLVGNGISGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVNQETEKGSKVIGDESIRRINRNRNSRPYQNRRKPFGEIHLKVSTIRESKSDDKRFSVFTGMKRLHLRAESREDRVAWMEALQAVKDMFPRISNSELMAPVDNVTISTEKLRNRLLEEGLGEAAILDSEQIMRTEFAALQNQLMLLKQKHSILIDTLRHLETDKVDLENTVVDESQRQWNDQENSNGLMLEKFSDGSASESEDDNERNDAAEEETDEDDNVFFDTRDILSSSSFKSNGSDYRVSSFSSDNDTFESEEDVNSSNKYIGTNHPHVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSYLLDQAYEWGKRGDSLMRILYVAAFAVSAYASTEGRICKPFNPLLGETYEANYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFSGDSNLKSKFWGRSIQLDPVGILTLEFEDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIEGNQEYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKTVSTLFGKWDESMHYVNGDYTGKGKGHESLSEARLLWKRSKAPMFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQQQRQARKMQESGWKPRWFAKDKASGTYRYMGGYWEAREKRNWDSCPDIFGQISPDHLSDEIQITS 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01798 788 Pfam Pleckstrin homology domain 83 199 - -
Vifa2g01798 788 ProSiteProfiles PH domain profile. 75 203 IPR001849 -
Vifa2g01798 788 SMART PH_update 76 205 IPR001849 -
Vifa2g01798 788 MobiDBLite consensus disorder prediction 310 338 - -
Vifa2g01798 788 MobiDBLite consensus disorder prediction 351 396 - -
Vifa2g01798 788 SUPERFAMILY Oxysterol-binding protein-like 401 783 IPR037239 -
Vifa2g01798 788 Gene3D - 76 205 IPR011993 -
Vifa2g01798 788 MobiDBLite consensus disorder prediction 13 36 - -
Vifa2g01798 788 FunFam oxysterol-binding protein-related protein 1D isoform X1 492 664 - -
Vifa2g01798 788 FunFam Oxysterol-binding protein-related protein 2A 703 774 - -
Vifa2g01798 788 Gene3D - 492 671 - -
Vifa2g01798 788 Gene3D - 703 768 - -
Vifa2g01798 788 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 77 760 IPR000648 GO:0008289
Vifa2g01798 788 MobiDBLite consensus disorder prediction 351 366 - -
Vifa2g01798 788 MobiDBLite consensus disorder prediction 321 337 - -
Vifa2g01798 788 MobiDBLite consensus disorder prediction 18 36 - -
Vifa2g01798 788 Pfam Oxysterol-binding protein 406 761 IPR000648 GO:0008289
Vifa2g01798 788 SUPERFAMILY PH domain-like 78 203 - -
Vifa2g01798 788 Coils Coil 273 293 - -
Vifa2g01798 788 Coils Coil 711 734 - -
Vifa2g01798 788 CDD PH_ORP_plant 78 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01798 Vifa-Chr2 464252964 464258558 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01798 K20456 - gmx:100137077 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01798 2 464252964 464258558 Vifa2g01798 2 464252964 464258558 ECH