Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01788 ATGGATTTAAACCAAATCCAATTCGCTCTGCGTTGTTGCGTACGCTTTCGAGCAATTATAAATGCTAAATCACTCCATTCTTACATAATTAAATCCGGCCATTTTAATCACGTTTTTCTCTTAAACAACATGATCTCTGTTTATGCTAAGTGTTACAGTTTCAACGATGCACGTAACCTGTTCGACGAAATGCCTCATAGAAACATAGTTTCTTGGACAACAATGGTCTCTGCATTCACCAATTCCGGCAGGCCCCGCGAAGCTCTGACCATCTATAACAAGATGTTAGAGTCCACAACAGAACAGCCCAATCAGTTCTTGTACTCTGCGGTTCTTAAAGCGTGTGGTCTTATGGGGAATGTTGAATTGGGTAAGATGGTTCATCACCATATATTTCAATCTAAGTTGGTCATTGATACTGTTCTGATGAATGCCCTCTTGGACATGTATGTCAAATGTGGGAGCTTGAGGGAAGCTCAACAAGTTTTCTATGAGATTCCTTGTAAAAATGCTACGTCGTGGAACACGCTCATTATGGGACATGCTAAACTAGGTTTGATTGGCGATGCGATGAAACTGTTTGATAAAATGCCGGAACCGGATATTGTATCTTGGAATAGTATTCTTGCTGGCCTTGTAGATAATGATAGTCCCCATGCGTTGGAATTTGTTTCTATGATGCATGTGAAAGGCCTTAAACTGGATGAATTCACATTACCAAATGCCCTCAAAGCTTGCGGTTTTCGTGGTGAGTTGATGTTAGGGAGGCAGATTCATTGTTATATTATTAAGTTGGGGCTTGAGTCTAGCTGCTATTGTTTATCGACATTGATTGATATGTATTCGAATTGCAAGTTTTTGGGTGAAGCAATGAAGATTTTTTATCAATTCTTCGGGAACTCTCCTGTTTCTGAAAGCTTGGCGCTTTGGAATTCTATGCTTTCTGGGTATGTTGCCAATGGAGATTATGAGGAAGCTCTCAGAATGATTTCTCATATGCATCATTCTGGTATACTCTTTGATTTTCATACCTTTAGTATTGCTTTAAAGATATGCATATACTTCGGTAACTCAAGTTTGGCATCTGAAGTGCACGGATTGGTCATCACTAGTGGCTATGAGTTAGATTTTGTTGTTGGGAGCATTCTTATTGATCTATATTCAAAACAGGGCAATATTGACAATGCATTAAGACTGTTTGAGAGGTTTCCGGATAAAGATGTTGTGGCTTGGTCCAGTTTGATTGCCGGTTGTGCTAGCTTCGGTTCAGATAAGTTAGCTTTTTCCCTTTTCATGGATATGATTCATTTGGGTCTTCAGATTGACCATTTTGTCATCTCAATTGTTCTGAAAGCTTGTTCAAGTATGGCATCTCACCAACGTGGCAAGCAAGTTCACACTTTATGTATTAAGAAGGGGTATGAATCAGAGAGAGTAATTACAACTGCTCTAATTGATATGTATGCAAAATGTGGTGACATCGTGGATGCCTTAGCTTTGTTTGGTTGTCTGTCAGAAATTGATACCATGAGTTGGACAGGTATAATTGTGGGATGTGCACAAAATGGAAGAGCTAACGAGGCAATTAGTCTTTTGCTTAAGATGATAGAATCTGGTACAAAGCCAAACAAAATCACCATTCTAGGTGTTCTTACTGCTTGTAGGCATGCTGGCCTAGTTGAAGAGGCATGGGCTGTGTTTAATTCTATTGAAACAAAACATGGATTGATACCATGCCCAGAACATTACAATTGTATGGTTGATATACTTGGTCAAGCTGGACGTTTTGAAGAAGCAGGAAAATTGATTAGTGAAATGCCATTTAAGCCCGACAAAACTTTATGGTCTTCCTTGCTTGGTGCCTGTGGAATTTACAAGAACCGACATCTTGCAAACATTGTTGCTGAGCATCTCCTTGCTACCTCACCAGAAGATGTTTCTGTATATATAATGCTGTCAAATGTTTATGCATCTCTTGGAATGTGGGATAGTTTAAGCAAAGTCAGAGAAGCTGTCAAAAAAATAGGCAAAAAAGGAGCTGGAAAGAGCTGGATTGAGATCTCAAGTTGA 2070 0.3937 MDLNQIQFALRCCVRFRAIINAKSLHSYIIKSGHFNHVFLLNNMISVYAKCYSFNDARNLFDEMPHRNIVSWTTMVSAFTNSGRPREALTIYNKMLESTTEQPNQFLYSAVLKACGLMGNVELGKMVHHHIFQSKLVIDTVLMNALLDMYVKCGSLREAQQVFYEIPCKNATSWNTLIMGHAKLGLIGDAMKLFDKMPEPDIVSWNSILAGLVDNDSPHALEFVSMMHVKGLKLDEFTLPNALKACGFRGELMLGRQIHCYIIKLGLESSCYCLSTLIDMYSNCKFLGEAMKIFYQFFGNSPVSESLALWNSMLSGYVANGDYEEALRMISHMHHSGILFDFHTFSIALKICIYFGNSSLASEVHGLVITSGYELDFVVGSILIDLYSKQGNIDNALRLFERFPDKDVVAWSSLIAGCASFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSMASHQRGKQVHTLCIKKGYESERVITTALIDMYAKCGDIVDALALFGCLSEIDTMSWTGIIVGCAQNGRANEAISLLLKMIESGTKPNKITILGVLTACRHAGLVEEAWAVFNSIETKHGLIPCPEHYNCMVDILGQAGRFEEAGKLISEMPFKPDKTLWSSLLGACGIYKNRHLANIVAEHLLATSPEDVSVYIMLSNVYASLGMWDSLSKVREAVKKIGKKGAGKSWIEISS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01788 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Vifa2g01788 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 182 687 IPR046960 GO:0003723|GO:0009451
Vifa2g01788 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Vifa2g01788 689 SUPERFAMILY TPR-like 53 664 IPR011990 GO:0005515
Vifa2g01788 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat family 67 115 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat family 309 351 IPR002885 -
Vifa2g01788 689 Gene3D Tetratricopeptide repeat domain 357 468 IPR011990 GO:0005515
Vifa2g01788 689 Gene3D Tetratricopeptide repeat domain 226 356 IPR011990 GO:0005515
Vifa2g01788 689 FunFam Pentatricopeptide repeat-containing protein At3g49710 121 253 - -
Vifa2g01788 689 FunFam Pentatricopeptide repeat-containing protein At4g08210 558 687 - -
Vifa2g01788 689 Pfam E motif 625 686 IPR046848 -
Vifa2g01788 689 Gene3D Tetratricopeptide repeat domain 481 689 IPR011990 GO:0005515
Vifa2g01788 689 Gene3D Tetratricopeptide repeat domain 2 125 IPR011990 GO:0005515
Vifa2g01788 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Vifa2g01788 689 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 360 461 - -
Vifa2g01788 689 FunFam Pentatricopeptide repeat-containing protein At4g14850 22 120 - -
Vifa2g01788 689 Gene3D Tetratricopeptide repeat domain 126 199 IPR011990 GO:0005515
Vifa2g01788 689 FunFam Pentatricopeptide repeat-containing protein chloroplastic 462 557 - -
Vifa2g01788 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat 142 167 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat 173 199 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat 381 406 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat 511 539 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat 482 504 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat 274 295 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat 409 438 IPR002885 -
Vifa2g01788 689 Pfam PPR repeat 582 606 IPR002885 -
Vifa2g01788 689 NCBIfam pentatricopeptide repeat 309 340 IPR002885 -
Vifa2g01788 689 NCBIfam pentatricopeptide repeat 583 606 IPR002885 -
Vifa2g01788 689 NCBIfam pentatricopeptide repeat 511 543 IPR002885 -
Vifa2g01788 689 NCBIfam pentatricopeptide repeat 173 198 IPR002885 -
Vifa2g01788 689 NCBIfam pentatricopeptide repeat 70 98 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01788 Vifa-Chr2 463609379 463611448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01788 1 687 Glycoside Hydrolase AT3G49170 30.057 5.09e-104 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01788 - - gmx:100780678 1090.49