LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g01675	ATGAGGATGACAGTGGAGCCAAGCTACTCTCCAAGTCCAACTACCAAAGAAGAAATCGAATGGCTCCCACTCCCAAAACACCCTCTCTTCACCACCGCCACCACCACCTCTCACGACGCTACCAGCAACGTTTCCCGAAACCTTCTAGCCTGGGACGGAGCCAATCGTCTCTATTTCTGGGACTCCTACAGTAACTGCCTTCATCGTTTATCTCTTCGCCTCGGTGATCCCGATCCTACTTCCGTTCTCGCCGCTTCTCCCTCTAAGGTTTTGCAAACTGATGTTGTGCTCGACTTTGATGTGCACAAAATCTCCATCAATAGGAATGGAACAGCGATACTTCTTTTTGGTTCTGAAAGACTCTGTGTTATGTATCTCTACGGACGCACATCCAAGAAGGATGTAAATTTGATTTGCAGGACCATTGCTGTTGGTTCTCAGACAGATTCCCTTGGAAACAATGATATTCGTGTATTGGAAGCATCATGGCACCCTTACAGTGATACTCATTTGGGAATCCTTTCTTCTGACTCAGTTTTTAGGCTTTTTAACCTGGCCGTGGATCCTTTGCAACCAGAGCAAGAATACTATTTACAGCCTACAGGGCATGGTCGATCCAGAAATGCCTCATCAATGTGTCCAGTCGGTTTTTCTTTTGGGGGAGACCATTTGTGGGACAGGTTTAGTGTTTTTGTTGCATTCAGTGATGGGTCTATCTATGTAATTTGCCCTGTTGTTCCATTTGGAAGTCTATTCAAATGTGAATCTTTATTAGACATATACAATGATGCTCATACATTTGGGCTAATGTCAGCCAACTCTGTAGCGGCTAGTAATTCAAAGTTGGCAATCTCCTGGCTAGAAGCAACATTTCCTGAGTTACAGAACCAAGAAAATGAAGGAGACAACTTGTCTTTGCTAAGATCTAATGCTTATGTAGTATTTGACGCATCTCTCGTCATGCAGGGACCTCTGCAAAGAGTAGGTCAGAGTGGAAACGGAGATTCAGTTGGTCGAAGTGCTGAATGTGAGGGTCGTGCAATAGATGCTCTAGCTGATGAGATCCAACCTGTCTGGAGTATCGGTAGTCCACCTCGTCTTCGTCTTGACTCCCATGACGAAATACTTGGCCTTGCTATGATTTGTGAGTCAACTGCCAGCAGTCCTCCGGGGAAGCTTGATCATAATAATGCCTGGTTGGGTAATCCATCCCCTCTGCTGAGACTGGCTATTGTTGATTTGGCTCTGCCACGAAGAGCAGACAGGGGTTATAATATTTCATTGTTCATTGATACCCTTATGCCAGAGAGAATATATTCCCTTCACGATGGAGGGATTGACTCAATAGTGTTGCACTGTCTTCCATTTACAAGTCAGGCAAATGGAAAGGATGATACAATGAGGACTCCTTCTGTACATCCTGTTCTTAATACATGCCAGAGTGGATCTGCTTCAGAGCCTTCACTTTGTGGTTTTGTGTCATTGTCAGATTCATTTGGATATTCCTGGAGTGTGGCTGTTACTCTTTCTCGAGAATGTGTTGTGCTTGAGATGAAAACTTGGAACCTTTTGCCTCAATTAAGCATCGATATGGAGACGAAGCACATTCAATCAGTGGGGCAATCAAATGAGAGAGATATTCAACCAATAATTAGCAAAGAACTGCTTAGTGGGCCCAAGGAGGTACTTGTTCCTTGGGCCTCTCAAAGTTTACGCTCAGTTGCAGCTGATTCAATTGAAGGTCGATCAACATTGCATCAGTATTTCAAGCTATTTCACGAAACTTACGTGGAATATGCTCATAAGGTGCACCTGGAACTCAAGCATCATGCACCTCAGTTGAAGAAAATCATTAATGACCAACGTTCTCGATTAGGTGATGCACAGCAGAAACTTTTGAAAGTTGAAGATAAAGAGCATATATTACAGAAGAGAATTGATCGTGCAATTCAAATGCACAATTCTTTGGAAGAGCGCTTACAACATTTAAGGAACTTACCTGGTGCTCACAAAAAACCACTGTCTAAAGCAGAGCGACAGTTCAAGTCTGAACTTGATCACTTCAAGGAAGTTGAGTTGGATGCATTGCATTCTTCTGTTGAAGCGGTAAGTGCCAGACTGAGAAGGCACATGCAAGCTTCGAAAGTTAGTCAACAGAAGAAAATATCAGGGAAAAAAGTTTGTGCTGGAGATGATCAGATATCAATACTCAAATCATCACTTGAAAAACTTTCACTTGTAAATACTGAAAATTCGAAGAAAGTAAAGATTGTTGAATCCACATTGAGTAACAAAGAAAGAAACAGCGGAGAATCAAGTCTACCTATGCTTAAAAACTGTTAG	2343	0.4277	MRMTVEPSYSPSPTTKEEIEWLPLPKHPLFTTATTTSHDATSNVSRNLLAWDGANRLYFWDSYSNCLHRLSLRLGDPDPTSVLAASPSKVLQTDVVLDFDVHKISINRNGTAILLFGSERLCVMYLYGRTSKKDVNLICRTIAVGSQTDSLGNNDIRVLEASWHPYSDTHLGILSSDSVFRLFNLAVDPLQPEQEYYLQPTGHGRSRNASSMCPVGFSFGGDHLWDRFSVFVAFSDGSIYVICPVVPFGSLFKCESLLDIYNDAHTFGLMSANSVAASNSKLAISWLEATFPELQNQENEGDNLSLLRSNAYVVFDASLVMQGPLQRVGQSGNGDSVGRSAECEGRAIDALADEIQPVWSIGSPPRLRLDSHDEILGLAMICESTASSPPGKLDHNNAWLGNPSPLLRLAIVDLALPRRADRGYNISLFIDTLMPERIYSLHDGGIDSIVLHCLPFTSQANGKDDTMRTPSVHPVLNTCQSGSASEPSLCGFVSLSDSFGYSWSVAVTLSRECVVLEMKTWNLLPQLSIDMETKHIQSVGQSNERDIQPIISKELLSGPKEVLVPWASQSLRSVAADSIEGRSTLHQYFKLFHETYVEYAHKVHLELKHHAPQLKKIINDQRSRLGDAQQKLLKVEDKEHILQKRIDRAIQMHNSLEERLQHLRNLPGAHKKPLSKAERQFKSELDHFKEVELDALHSSVEAVSARLRRHMQASKVSQQKKISGKKVCAGDDQISILKSSLEKLSLVNTENSKKVKIVESTLSNKERNSGESSLPMLKNC	780

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g01675	780	Coils	Coil	618	638	-	-
	Vifa2g01675	780	Coils	Coil	646	666	-	-
	Vifa2g01675	780	PANTHER	NUCLEOPORIN NUP84-RELATED	348	767	IPR037700	GO:0000055\|GO:0000056\|GO:0006913\|GO:0017056
	Vifa2g01675	780	Pfam	Nuclear pore component	23	198	IPR019321	-
	Vifa2g01675	780	Pfam	Nuclear pore component	425	759	IPR019321	-
	Vifa2g01675	780	SUPERFAMILY	WD40 repeat-like	38	243	IPR036322	GO:0005515

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g01675	K14318		-	gmx:100801853	1245.72

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g01675	2	437114183	437120313	Vifa2g01675	2	437114183	437120313	ECH