Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g01596 | ATGAATGGCGAGGAGTGTGAAGAAATGGAAAGAGTGAATGAGAAATTGGTTTACATGTGGGGTTATTTACCGGGAGCTTTGCCGCAAAGGACGCCGTTGTTGAGCCCGGTTCTCGTTAGGGCTCCGGCGAATGGTTGTAACTGGAAAGATGTTTCCGGTGGTGGTTGTGGATTCGCCATGGCTATATCTGAACAAGGAAAGCTTATCACATGGGGATCAACGGATGATCTTGGCCAAAGTTATGTAACTTCGGGAAAGCACGGGGAAACTCCAGAGCCTTTCCCTCTTCCAGATGAAGTTTCTATTGTACAAGCTGCTTCTGCGTGGGCACATTGTGTTGCTGTAACAGATTGTGGACAAGTTTACACATGGGGTTGGAAGGAATGTATTCCTTCTGGGAAGTTATTAGGTGAACCTTTGCCAGGGGTAAGTTCTGCAAAAGTTGCACAAGGAAAGCGGAGTTCGTTCTTGACAGAGCAAGTCGGCTCTCATTCAGAAGTCTCAAAGTCCATCGGAGGAACTGCTTCCAGTGGAGAAGAAAGTACTAAGAGAAGGAAGGTATCTTCAGCAAAGCAAACAGCTGAAATCTCATCATCTGGTGATGATATTCTGACAGCAATGCCATGTCTTGTCACACTAAACCCTGGAGTAAGGATAACAAGTGTTGCTGCCGGTGGCCGTCATACCCTAGTATTGTCAGATATAGGACAGGTGTGGGGCTGGGGCTACGGAGGCGAAGGGCAGCTTGGTTTAGGTTCCAGAATACGTATGGTGTCCTCTCCCCATCTTATTCCATGTATTGATTCCTCTTCGTATGGAAACGATATATCAACATCGCTGGCTCAAGGAAGCACAAGTTCAGAGGGACAGAATTTTAGGATTCCTGGAAGTTATATAAAGGGTATTGCCTGTGGAGGTCGACATAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTGCGTTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTAAGTCCGACCTGTGTGTCTTCCTTATTGGGTATTCGAATAGAAGTAGTTGCTGCTGGCCTGTGGCATACTGTCTGTACATCTGCTGATGGTGACGTATATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGTTCTGATCAAGCTGAGACTCTACCAAGACTACTGGATTGTCCGAACTTGGAAAATGTCAACGTAAAGACCATATCTTGCGGGGCTCGTCATACTGCTCTAGTAACAGATAACGGAAAAGTCTTCAGCTGGGGATGGAACAAGTATGGACAGTTGGGCCTCGGGGACGTGATTGACCGCAACATTCCTTCTGAAGTAAGCATAGAAGGTTGTGTAGCCAAAAACGTTGCATGTGGTTGGTGGCACACTCTTCTTTTGGCCGAGTCTCCCACTTGA | 1425 | 0.4716 | MNGEECEEMERVNEKLVYMWGYLPGALPQRTPLLSPVLVRAPANGCNWKDVSGGGCGFAMAISEQGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPDEVSIVQAASAWAHCVAVTDCGQVYTWGWKECIPSGKLLGEPLPGVSSAKVAQGKRSSFLTEQVGSHSEVSKSIGGTASSGEESTKRRKVSSAKQTAEISSSGDDILTAMPCLVTLNPGVRITSVAAGGRHTLVLSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLIPCIDSSSYGNDISTSLAQGSTSSEGQNFRIPGSYIKGIACGGRHSAVITDAGAVLAFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEVVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAETLPRLLDCPNLENVNVKTISCGARHTALVTDNGKVFSWGWNKYGQLGLGDVIDRNIPSEVSIEGCVAKNVACGWWHTLLLAESPT | 474 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g01596 | 474 | Gene3D | - | 271 | 474 | IPR009091 | - | |
| Vifa2g01596 | 474 | Gene3D | - | 193 | 270 | IPR009091 | - | |
| Vifa2g01596 | 474 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 66 | 118 | IPR000408 | - | |
| Vifa2g01596 | 474 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 302 | 312 | IPR000408 | - | |
| Vifa2g01596 | 474 | SUPERFAMILY | RCC1/BLIP-II | 17 | 128 | IPR009091 | - | |
| Vifa2g01596 | 474 | Gene3D | - | 12 | 159 | IPR009091 | - | |
| Vifa2g01596 | 474 | MobiDBLite | consensus disorder prediction | 159 | 194 | - | - | |
| Vifa2g01596 | 474 | SUPERFAMILY | RCC1/BLIP-II | 205 | 472 | IPR009091 | - | |
| Vifa2g01596 | 474 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 422 | 472 | IPR000408 | - | |
| Vifa2g01596 | 474 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 316 | 363 | IPR000408 | - | |
| Vifa2g01596 | 474 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 367 | 417 | IPR000408 | - | |
| Vifa2g01596 | 474 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 421 | 469 | IPR000408 | - | |
| Vifa2g01596 | 474 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 81 | 470 | - | - | |
| Vifa2g01596 | 474 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 408 | 418 | IPR000408 | - | |
| Vifa2g01596 | 474 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 219 | 248 | - | - | |
| Vifa2g01596 | 474 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 368 | 421 | IPR000408 | - | |
| Vifa2g01596 | 474 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 222 | 232 | IPR000408 | - | |
| Vifa2g01596 | 474 | PRINTS | Chromosome condensation regulator RCC1 signature | 357 | 375 | IPR000408 | - | |
| Vifa2g01596 | 474 | PRINTS | Chromosome condensation regulator RCC1 signature | 417 | 438 | IPR000408 | - | |
| Vifa2g01596 | 474 | PRINTS | Chromosome condensation regulator RCC1 signature | 102 | 115 | IPR000408 | - | |
| Vifa2g01596 | 474 | PRINTS | Chromosome condensation regulator RCC1 signature | 222 | 238 | IPR000408 | - | |
| Vifa2g01596 | 474 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 236 | 315 | IPR000408 | - | |
| Vifa2g01596 | 474 | MobiDBLite | consensus disorder prediction | 159 | 178 | - | - | |
| Vifa2g01596 | 474 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 316 | 367 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g01596 | Vifa-Chr2 | 427044249 | 427049000 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g01596 | - | - | gmx:100778841 | 813.527 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa2g01596 | 2 | 427044249 | 427049000 | Vifa2g01596 | 2 | 427044249 | 427049000 | ECH |