Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01595 ATGGAAGAACCAAAGGAGGAACCATGGGACTCCTCCTCCTCCTCATGGTCACGTTCTGTTAGCGAAACAGTAAATGGGTCACACGAATTAACGATAAAGGGTTATTCTTTATCGAAAGGAATGGGGGCTGGAAGGTACATCACCAGTGACACTTTCAGCGTTGGTGGTTACGATTGGGCTGTTTACTTTTACCCTGACGGAAAGAATCCTGAAGATAATTCCGTGTATGTTTCCGTTTTCATTGCACTTGCTAGTGAGGGTACTGATGTTAGGGCTTTATTCAAATTGACATTGCTTGATCAAACTTCAAAGGGGAATCATAAAGTTCATAGCCATTTTGATCGTCCTCTTGAGAGTGGTCCTTATACTCTCAAGTACAGAGGCAGCATGTGGGGTTACAAGCGTTTTTTTAAGAGGTCGGTGTTGGAGAATTCGGAGTATTTGAAGGATGATTGTCTTGTTATGCATTGCACGGTTGGTGTTGTTAAGACGCGGTTTGAGAGATCGAAACATGGTGTTGTTGTGCCTGCTTCTGATATGGGTAAAGATTTTAAGGATTTGTTTGAGTCTCAAGTTGGTTGTGACATTGTTTTTAAGGTCAAGAGTGAATGCTTTAAGGCTCATAAGTTGATTCTCGCTGCTCGGTCGCCTGTGTTTAGAGCTCAGTTTTATGGACTTGTTGGGGATCCTTGCTTAGAGGAAGTAGTGGTAGAGGATATTGAACCCTTTATCTTCAAGGCAATGCTTCTCTTCATTTACTCGGACAAAATTCCTGAAATCTATGAGGTTATGGGCTCAATACCTATGTGCTCTTATACTGTCATGGTGCAGCATCTATTGGCTGCTGCTGATCTCTATAATCTTGATAGGCTAAAAATGTTGTGTGAATCAAGATTGTGTGAAGAAATGAATACGGAGACCGTAGCTACAACACTTTCCCTGGCCGAGCAACATCACTGTCCACAGCTCAAGGCAATCTGTTTAAAATTTATTGCAAATTCAAAAAACTTGGGAGCTGTAATGCAATCCGAAGCTTTTTTGCATTTGAAAGACAGCTGCCCTACAATGTTAATGGAATTGCTGGAGATGTTTGCCTCAGTGGATCATAGCTCAAGCCTGTTGTTGAGCAGGAAAAGAAGTGTCAGTAGCATATACGGGCAGGATTTAACCGATGGAGGGGCAGCAGAATCAGTCAATCCAAATAGCAGGCGTATCAGGAGGCGGACTTAA 1230 0.4252 MEEPKEEPWDSSSSSWSRSVSETVNGSHELTIKGYSLSKGMGAGRYITSDTFSVGGYDWAVYFYPDGKNPEDNSVYVSVFIALASEGTDVRALFKLTLLDQTSKGNHKVHSHFDRPLESGPYTLKYRGSMWGYKRFFKRSVLENSEYLKDDCLVMHCTVGVVKTRFERSKHGVVVPASDMGKDFKDLFESQVGCDIVFKVKSECFKAHKLILAARSPVFRAQFYGLVGDPCLEEVVVEDIEPFIFKAMLLFIYSDKIPEIYEVMGSIPMCSYTVMVQHLLAAADLYNLDRLKMLCESRLCEEMNTETVATTLSLAEQHHCPQLKAICLKFIANSKNLGAVMQSEAFLHLKDSCPTMLMELLEMFASVDHSSSLLLSRKRSVSSIYGQDLTDGGAAESVNPNSRRIRRRT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01595 409 FunFam BTB-POZ and math domain 1 170 297 - -
Vifa2g01595 409 SMART BTB_4 194 303 IPR000210 GO:0005515
Vifa2g01595 409 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g01595 409 ProSiteProfiles BTB domain profile. 194 257 IPR000210 GO:0005515
Vifa2g01595 409 Pfam BTB/POZ domain 184 301 IPR000210 GO:0005515
Vifa2g01595 409 ProSiteProfiles MATH/TRAF domain profile. 25 159 IPR002083 GO:0005515
Vifa2g01595 409 SUPERFAMILY TRAF domain-like 22 161 - -
Vifa2g01595 409 CDD MATH 26 159 IPR002083 GO:0005515
Vifa2g01595 409 Gene3D - 302 383 - -
Vifa2g01595 409 CDD BTB_POZ_BPM_plant 180 300 - -
Vifa2g01595 409 SUPERFAMILY POZ domain 176 301 IPR011333 -
Vifa2g01595 409 Gene3D Potassium Channel Kv1.1; Chain A 170 297 IPR011333 -
Vifa2g01595 409 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 17 361 IPR045005 GO:0016567
Vifa2g01595 409 SMART math_3 30 142 IPR002083 GO:0005515
Vifa2g01595 409 CDD BACK_AtBPM-like 300 362 IPR034090 -
Vifa2g01595 409 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 24 164 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01595 Vifa-Chr2 426922946 426928633 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01595 K10523 - gmx:100778300 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01595 2 426922946 426928633 Vifa2g01595 2 426922946 426928633 ECH