Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01584 ATGGCTAACTTAGTGAGCAATAGCATAGGCTCAAGATGGAACCAAAAAGAGCTTAATAAATGCATGAATGAATGGAAAGGTAAGGGTTTTTCAGTTCATGGATCGACTTGTGACGCGTCTTCTTCTTCTCAAAGAGATGAGCTTATTCGACAAGTGGCTTCTACCTTCAACGGCAAGCTCAACATACTTGTAAACAATGCTGGTACAAATGTGAGGAAGCCAACAATTGAGTTCACAGCCGAAGATTATTCAAAAGTGATGACTACTAACTTGGATTCTGCATTCCATCTATGCCAACTCGCATATCCTCTTCTTAAAGAATCTGGTAACGGAAGCATTGTGTTTATGTCTTCGGTTGCGTCTCTCACATGCGTAGGTTCTGCATCCGTTTATGCAGTTAGTAAAGCTGCAATCAATCAGCTGACAAAAAATCTTGCTTGTGAATGGGCGAAAGACAATATAAGGAGCAACTGCGTTGCGCCTTGGTATACAAAAACATCGCTTGTGAAAAACTTTATCGCCAATCAAGAGTTTGTCGATCAAGTACTATCTCGAACACCGATAAAGAGGATAGCAGAGACACATGAAGTGTCTTCCTTGGTCACTTTCCTTTGCCTGCCAGCTGCTTCCTACATTACTGGACAGACTGTTTCTGTTGATGGAGGATTTACTGTGAATGGATTTCAACCCAGCATTAGAATAACCTAA 708 0.4124 MANLVSNSIGSRWNQKELNKCMNEWKGKGFSVHGSTCDASSSSQRDELIRQVASTFNGKLNILVNNAGTNVRKPTIEFTAEDYSKVMTTNLDSAFHLCQLAYPLLKESGNGSIVFMSSVASLTCVGSASVYAVSKAAINQLTKNLACEWAKDNIRSNCVAPWYTKTSLVKNFIANQEFVDQVLSRTPIKRIAETHEVSSLVTFLCLPAASYITGQTVSVDGGFTVNGFQPSIRIT 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01584 235 Gene3D - 2 227 - -
Vifa2g01584 235 PRINTS Glucose/ribitol dehydrogenase family signature 187 207 IPR002347 -
Vifa2g01584 235 PRINTS Glucose/ribitol dehydrogenase family signature 105 121 IPR002347 -
Vifa2g01584 235 PRINTS Glucose/ribitol dehydrogenase family signature 152 169 IPR002347 -
Vifa2g01584 235 PRINTS Glucose/ribitol dehydrogenase family signature 58 69 IPR002347 -
Vifa2g01584 235 PRINTS Glucose/ribitol dehydrogenase family signature 131 150 IPR002347 -
Vifa2g01584 235 Pfam Enoyl-(Acyl carrier protein) reductase 9 224 - -
Vifa2g01584 235 FunFam Short-chain dehydrogenase reductase 2 229 - -
Vifa2g01584 235 PANTHER TROPINONE REDUCTASE 13 227 IPR045000 GO:0016491
Vifa2g01584 235 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 150 IPR002347 -
Vifa2g01584 235 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 111 119 IPR002347 -
Vifa2g01584 235 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 58 69 IPR002347 -
Vifa2g01584 235 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 226 IPR036291 -
Vifa2g01584 235 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 118 146 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01584 Vifa-Chr2 423833798 423834883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01584 14 230 Miscellaneous Gene Families AT2G29290 55.708 7.29e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01584 K08081 - gmx:100819646 344.354