Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01578 ATGGCTGCTTCAGTCTCCACTGTTGGAGCTGTCAAAACTCCTATGAGCTTGAATGGCTCAGTAGTAGCAGGACCTTCAGTTTCCAATTCATCTTTCTTCGGCACAAGCTTGAAGAAGATTACTTCAAGGCATCCAAACACTAAAGTTTCTTCTGGAAGTTTCAAAGTTTTTGCTGCTAAAGAGATTGACCCTGAAAAGCAGACAGACGGAGACAGGTGGAGGGGTTTGGCCTATGATATTTCAGATGACCAACAAGACATCACCAGAGGAAAGGGTTTGGTTGATTCTGTTTTCCAAGCTCCACAAAATACTGGAACTCATTATGCAGTCATGAGTTCTTATGAATACATTAGCACCGGACTTAAACAGTACGACTTTGACAACACTATGAGTGGTTTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCATATCACTAAAAATTTCATGACCTTGCCAAACATCAAGGTTCCTCTCATTCTTGGTGTCTGGGGAGGCAAAGGACAGGGAAAATCTTTCCAAGCTGAGCTTGTTTTTGCAAAGATGGGAATCAACCCAATCATGATGAGTGCCGGAGAGCTTGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGACAGCGATACCGTGAAGCTGCTGACTTAATCAAGAAGGGAAAGATGTGTGCTTTGTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGAACTACCCAGTACACTGTCAACAACCAGATGGTGAATGCCACACTCATGAACATTGCTGATAACCCCACAAATGTCCAACTCCCTGGTATGTACAACAAGGAAGAGAATCCTCGTGTTCCCATCATCGTCACTGGTAACGATTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGACGTATGGAGAAATTCTACTGGGCTCCTACAAGAGAGGACCGAATTGGTGTCTGTACCGGAATATTCCGCCATGACAATATTGAAAATGAGGACATTGTCAGGCTTGTTGACACCTTCCCTGGTCAATCCATTGATTTCTTTGGTGCATTGAGGGCTAGAGTGTATGACGACGAAGTGAGGAAGTGGATTTCTGGGATAGGTATTGAAGGAATTGGAAAGAGGCTTGTGAACTCAAAGGAAGGACCACCAGAATTTGAGCAGCCAAAGATGACACTAGAAAAGCTGTTGGAATATGGTGGCATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCAGACAAGTATTTGAATGAGGCTGCTCTTGGTGATGCTAATCAAGATGCTATTAAAAGGGGAGCTTTCTAA 1314 0.4376 MAASVSTVGAVKTPMSLNGSVVAGPSVSNSSFFGTSLKKITSRHPNTKVSSGSFKVFAAKEIDPEKQTDGDRWRGLAYDISDDQQDITRGKGLVDSVFQAPQNTGTHYAVMSSYEYISTGLKQYDFDNTMSGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRHDNIENEDIVRLVDTFPGQSIDFFGALRARVYDDEVRKWISGIGIEGIGKRLVNSKEGPPEFEQPKMTLEKLLEYGGMLVQEQENVKRVQLADKYLNEAALGDANQDAIKRGAF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01578 437 Gene3D - 310 422 - -
Vifa2g01578 437 Pfam ATPase family associated with various cellular activities (AAA) 165 306 IPR003959 GO:0005524|GO:0016887
Vifa2g01578 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 334 IPR027417 -
Vifa2g01578 437 Gene3D - 125 309 IPR027417 -
Vifa2g01578 437 PANTHER - 21 427 IPR044960 -
Vifa2g01578 437 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 125 309 - -
Vifa2g01578 437 FunFam Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 310 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01578 Vifa-Chr2 423326690 423329353 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01578 - - psat:127083843 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01578 2 423326690 423329353 Vifa2g01578 2 423326690 423329353 ECH