Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01576 ATGACTACTTCCTTACTTTTCTTCTTCTTTCTACTCTCCACCATCTCTGTCACAACCACAGATGGGAATGGAACAGGAATACAACTGATAATTGTAAACAACTGCAAAGAGAGTGTATGGCCAGGAATTCTCAGCAATGGAGGACAACCTTCAATTCAAGGAGGTGGATTCCATCTTCCAAGCGGCGAACAAGTTGTTCTCCAACTCCCTAACCATTGGGCAGGTAGAATCTGGGGGAGACAAGGCTGCTGTTTCGACGAAACAACCGGAAAAGGCTCGTGTCAAACCGGAGACTGTGGAGGCCAACTGAAATGCAAGGGAACTGGTGGTGTCCCTCCAGCTACACTTGTTGAAATGACACTTGGAACCTCAGAATCACCTTTGCATTACTATGATGTTAGTTTAGTTGACGGTTTTAACCTTCCCATGTCAATGAAGCCTGTTGGTGTCGGTGTTGGTGGTGGTGGTTGTGGTGATGCTTCTTGTGCAGCTGATTTGAATGGTTGTTGTCCTTCTTCACTTGTTGTGAAACATGATGGTAAAGTTGTAGGGTGTAAAAGTGCTTGTTTGGCTACAAAATCAGATAAGTATTGTTGCACTGGTGAATTTGCTGATCCAAAAAGTTGCAAGCCAACTATGTTTGCTCGTGTTTTTAAGAGTGTTTGTCCTAGAGCTTATACTTATGCTTATGATGATTCAACTGGGCTTATGTCTTGTTTGGCAAATCGGTATGCCATTACATTTTGCCCTCCATGA 756 0.4352 MTTSLLFFFFLLSTISVTTTDGNGTGIQLIIVNNCKESVWPGILSNGGQPSIQGGGFHLPSGEQVVLQLPNHWAGRIWGRQGCCFDETTGKGSCQTGDCGGQLKCKGTGGVPPATLVEMTLGTSESPLHYYDVSLVDGFNLPMSMKPVGVGVGGGGCGDASCAADLNGCCPSSLVVKHDGKVVGCKSACLATKSDKYCCTGEFADPKSCKPTMFARVFKSVCPRAYTYAYDDSTGLMSCLANRYAITFCPP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01576 251 CDD TLP-PA 28 249 - -
Vifa2g01576 251 ProSiteProfiles Thaumatin family profile. 29 251 IPR001938 -
Vifa2g01576 251 Gene3D Thaumatin 27 250 IPR037176 -
Vifa2g01576 251 PANTHER OS03G0233200 PROTEIN 10 250 IPR001938 -
Vifa2g01576 251 PIRSF PR5 1 251 IPR001938 -
Vifa2g01576 251 ProSitePatterns Thaumatin family signature. 90 105 IPR017949 -
Vifa2g01576 251 FunFam Thaumatin-like protein 1a 27 250 - -
Vifa2g01576 251 Pfam Thaumatin family 33 250 IPR001938 -
Vifa2g01576 251 SMART tha2 29 250 IPR001938 -
Vifa2g01576 251 SUPERFAMILY Osmotin, thaumatin-like protein 28 251 IPR037176 -
Vifa2g01576 251 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Vifa2g01576 251 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Vifa2g01576 251 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Vifa2g01576 251 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01576 Vifa-Chr2 423261457 423262335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01576 4 250 Receptor kinase-like Gene Family AT5G38280 38.492 2.88e-52 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01576 - - gmx:100809093 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01576 2 423261457 423262335 Vifa2g01576 2 423261457 423262335 ECH