Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01571 ATGAACATGCCAACCTCTTCCCATGTTCTCCTTCCTCTTAGAGTTATAATTTTCATCATGTTCCTTCAAATCCAAACAATCACTTCTTCTCTCTCATCTTCCCCACAAAAACAACCTTTCATATTACCATTAAAACTCCAAACACTCCCACGTGGCACAATTTCGCTTCCAAACCCTTCTTCACGTAAACTCTCTTTCCAACACAATGTAACCTTAACCGTTTCACTAACATTAGCCTCACCCCCACAGAATGTTACCATGGTCCTCGACACAGGGAGTGAACTCTCATGGCTACACTGTAAAAAGCTTTCAAATTTAAACTCCATTTTCAACCCCCTCCTCTCTTCAACATACACCCCTATCCCATGCACTTCACCCGTCTGTAAAACCCGAACCCGAGACTTCCCCGTACCCGTTTCATGCGACGCAAAAAAACTCTGCCACGCTACAGTCTCCTACGCTGACGCCTCCTACATGGAAGGAAACCTCGCCACGGAAACTTTCTTCGCCGCCGGGTCAGCACAACCCGGAACTATATTCGGGTGTATGGATTCCGGGTTCAGCTCCAACACAAACGAAGACTCCAAAACAACCGGGTTAATGGGCATGAACCGTGGTTCTCTCTCGTTTGTAACCCAAATGGGGTTACCCAAATTCTCGTACTGCATCTCCGGTAAAGACTCCACCGGCGTGTTACTATTCGGAGACTCAAATTTTAACTGGCTCGGCCCATTAAAGTACACACCTCTAGTCAAAATGTCAATCCCATTACCGTATTTCGATCGAGTCGCGTACACGGTTCGACTCGAGGGAATACGAGTCGGGAAGAAATTACTTCAGGTACCAAAAACAATCTTCGCACCGGATCACACCGGAGCGGGTCAGACAATGGTGGATTCGGGTACACAGTTTACCTTCCTTTTAGGACCGGTTTACACCGCATTGCGAGAAGAATTCATAGCTCAAACAAAAGGAGTAATGACCCTTTTGAACGACACGAATTTCGTCTTCCAGGGAGCTATGGATTTGTGTTATAGAGTCGGGTCGGGTCGGGTGGGTCTTCCGCCTTTACCGGCGGTGACGCTTATGTTTGAAGGAGCGGAGATGAGTGTTTCAGGGGAGAGATTATTGTACAAAGTTAGTGATGACGTGGCAAAATGGAAGAATGATTTGGTGTATTGTTTCACGTTTGGGAACTCTGACTTGTTGGGAATTGAGGCTTATGTTATTGGACATTATCATCAAATGAATGTGTGGATGGAGTTTGATTTGGTGAAGTCTAGAGTTGGATTTGTTGATACTAGTTGTGAACTTGCAAGTCAACGATTAGGGATGGTTCCTTAG 1344 0.4576 MNMPTSSHVLLPLRVIIFIMFLQIQTITSSLSSSPQKQPFILPLKLQTLPRGTISLPNPSSRKLSFQHNVTLTVSLTLASPPQNVTMVLDTGSELSWLHCKKLSNLNSIFNPLLSSTYTPIPCTSPVCKTRTRDFPVPVSCDAKKLCHATVSYADASYMEGNLATETFFAAGSAQPGTIFGCMDSGFSSNTNEDSKTTGLMGMNRGSLSFVTQMGLPKFSYCISGKDSTGVLLFGDSNFNWLGPLKYTPLVKMSIPLPYFDRVAYTVRLEGIRVGKKLLQVPKTIFAPDHTGAGQTMVDSGTQFTFLLGPVYTALREEFIAQTKGVMTLLNDTNFVFQGAMDLCYRVGSGRVGLPPLPAVTLMFEGAEMSVSGERLLYKVSDDVAKWKNDLVYCFTFGNSDLLGIEAYVIGHYHQMNVWMEFDLVKSRVGFVDTSCELASQRLGMVP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01571 447 PANTHER ASPARTYL PROTEASE-RELATED 18 436 IPR001461 GO:0004190|GO:0006508
Vifa2g01571 447 FunFam Aspartic proteinase PCS1 63 236 - -
Vifa2g01571 447 Pfam Xylanase inhibitor C-terminal 264 432 IPR032799 -
Vifa2g01571 447 Pfam Xylanase inhibitor N-terminal 74 236 IPR032861 -
Vifa2g01571 447 CDD pepsin_A_like_plant 71 436 IPR034161 -
Vifa2g01571 447 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 87 98 IPR001969 GO:0004190|GO:0006508
Vifa2g01571 447 Gene3D Acid Proteases 242 441 IPR021109 -
Vifa2g01571 447 ProSiteProfiles Peptidase family A1 domain profile. 72 432 IPR033121 -
Vifa2g01571 447 Gene3D Acid Proteases 64 235 IPR021109 -
Vifa2g01571 447 FunFam Aspartic proteinase PCS1 240 440 - -
Vifa2g01571 447 SUPERFAMILY Acid proteases 73 436 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01571 Vifa-Chr2 422731648 422732991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01571 73 251 Miscellaneous Gene Families AT1G44130 30.570 2.18e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01571 - - gmx:100783835 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01571 2 422731648 422732991 Vifa2g01571 2 422731648 422732991 ECH