Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01560 ATGGAGTCACCACAAGCAAGAAAATCAGGGCTAAATCTCCCAGCTGGAATGTCCAGCATAACCTCCTTACGCCTCGAAACCCTCTCAACTCCACCTTCCTCCGCTTCGCCTCGCGCAATCTCGAATCTCTCATCATCATCACCTTCTAAAACTTCTTCATGTAGTGATAGATTCATACCTTGTAGATCCTCTTCAAGGCTCCACACGTTCGGATTAATCGAAAAACCGTCACCGGTTAAAGAAGGGAGTTGTGGTGCTGCTGGTGCTCCTGCTTCGCCTATGATCAGTCCTAGCAAGAATATGCTTCGGTTTAAGACCGATCATTCTGGACCTTCTTCGCCGTTTTCTTCGTCGCCTTCGATTTTTGGTCACCATTCTGGTTTCTCTAATGAATCTGCTACTCCTCCTAAGCCTCCTAGGAAAGTTCCCAAGACACCCCACAAGGTTTTGGATGCGCCTTCGCTTCAAGATGACTTTTACTTGAATCTTGTGGACTGGTCCTCACAAAATACTCTAGCAGTAGGGCTTGGCACTTGTGTTTATCTATGGAGTGCTTCAAACAGCAAAGTGACTAAGCTATGTGACTTGGGGCCTTATGATGGTGTATGTTCTGTCCAGTGGACCAAGGAGGGTTCTTTCATATCTATTGGTACAAACCTTGGTCAAGTTCAGATTTGGGATGGTACTAAATGCAAAAAGGTCAGAACAATGGCAGGGCATCAAACAAGAACCGGTGTCTTGGCATGGAATTCTCGAATTTTAGCTTCGGGGAGTAGGGATAGGAACATACTTCAGCATGACATGAGGGTTTCAAGTGACTTTATTGGCAAGCTTGTCGGCCACAAGTCTGAGGTTTGTGGATTGAAATGGTCATGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAACCAGCTGTTGGTATGGAATCAGCATTCTCAGACGCCAACTTTGAGACTTACAGAGCACACGGCTGCTGTGAAGGCCATTGCTTGGTCGCCTCACCAGAGCAACCTCCTTGTGTCCGGAGGTGGAACTGCTGATAGGTGCATTCGTTTCTGGAACACTACGAATGGTCACCAATTGAACTCGGTTGACACTGGAAGCCAGGTGTGTAACCTTGCTTGGAGTAAAAATGTAAATGAGCTAGTAAGTACTCATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCACTATCAAAGGTTGCAACTCTTACTGGTCACAGCATGAGAGTATTATACCTAGCAATGTCTCCTGATGGTCAGACAATAGTGACTGGTGCTGGGGATGAGACTCTGCGGTTTTGGAATATTTTCCCATCAATGAAAACACCTGCCCCAGTTAAAGATACAGGCCTTTGGTCACTGGGCCGCACCCAAATTCGATGA 1398 0.4607 MESPQARKSGLNLPAGMSSITSLRLETLSTPPSSASPRAISNLSSSSPSKTSSCSDRFIPCRSSSRLHTFGLIEKPSPVKEGSCGAAGAPASPMISPSKNMLRFKTDHSGPSSPFSSSPSIFGHHSGFSNESATPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNLGQVQIWDGTKCKKVRTMAGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQTPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKTPAPVKDTGLWSLGRTQIR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01560 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 364 IPR001680 GO:0005515
Vifa2g01560 465 CDD WD40 181 440 - -
Vifa2g01560 465 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 44 447 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vifa2g01560 465 SUPERFAMILY WD40 repeat-like 141 441 IPR036322 GO:0005515
Vifa2g01560 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 319 IPR001680 GO:0005515
Vifa2g01560 465 SMART WD40_4 358 398 IPR001680 GO:0005515
Vifa2g01560 465 SMART WD40_4 143 184 IPR001680 GO:0005515
Vifa2g01560 465 SMART WD40_4 271 310 IPR001680 GO:0005515
Vifa2g01560 465 SMART WD40_4 230 267 IPR001680 GO:0005515
Vifa2g01560 465 SMART WD40_4 187 227 IPR001680 GO:0005515
Vifa2g01560 465 SMART WD40_4 313 355 IPR001680 GO:0005515
Vifa2g01560 465 SMART WD40_4 401 440 IPR001680 GO:0005515
Vifa2g01560 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 441 - -
Vifa2g01560 465 FunFam FIZZY-related 2 isoform 1 143 443 - -
Vifa2g01560 465 ProSitePatterns Trp-Asp (WD) repeats signature. 342 356 IPR019775 -
Vifa2g01560 465 MobiDBLite consensus disorder prediction 27 58 - -
Vifa2g01560 465 Pfam Eukaryotic translation initiation factor eIF2A 306 434 IPR013979 -
Vifa2g01560 465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 310 - -
Vifa2g01560 465 MobiDBLite consensus disorder prediction 126 146 - -
Vifa2g01560 465 Gene3D - 99 442 IPR015943 GO:0005515
Vifa2g01560 465 ProSitePatterns Trp-Asp (WD) repeats signature. 427 441 IPR019775 -
Vifa2g01560 465 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 441 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01560 Vifa-Chr2 420493499 420496116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01560 275 441 Miscellaneous Gene Families AT5G08390 20.833 8.67e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01560 K03364 - zju:107413440 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01560 2 420493499 420496116 Vifa2g01560 2 420493499 420496116 ECH