Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01552 ATGGAGGATCCATCGGAGAGGTTGGGATCGGCGGATTTGGATTCCGTCTCCGCCGTTAAGACCGACGACTTCTCCATGGAAATTGATCCGCCGTTTCAGGAAAACGCTGTAACTGCCGAGGACTGGCGGAAGTCTCTCAGCAAAGTCGTTCCCGCCGTCGTCGTCCTCCGAATAACCGCTACTCGTGCTTTCGATACCGAGTCCGCTTCCGCCAGCTACGCTACTGGTTTCGTCGTCGACAAACGCCGTGGTATTATCCTCACTAATCGCCACGTCGTCAAGCCTGGACCTGTTGTTGCAGAAGCCATGTTCTTGAACCGCGAAGAGGTTCCGGTGCATCCTATATACAGAGATCCAGTACATGATTTTGGGTTCTTTCGGTATGATCCTAGTGCCATACAATTTCTAAACTATGAAGAGATACCTCTTGCTCCAGAGGGTGCTTGTGTTGGATTAGAAATCAGAGTTGTTGGTAATGATAGTGGTGAAAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGACAGGGATGCTCCTCACTATAAGAAGGACGGGTATAATGACTTCAACACATTCTATATGCAAGCAGCATCTGGGACCAAAGGAGGATCAAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCAGTTGGCCTAAATGCTGGGAGCAAGACAACAAGTGCATCGGCATTCTTTTTACCTCTAGAACGAGTTGTGAGGGCATTAAGGTTTCTTCAAAAGGGGAGTGAAACTTATGTTGATAAATGGATGGCAGTTTCTATACCTCGCGGTACACTTCAGGTGACTTTTCTCCATAAAGGGTTTGATGAGACTCGTCGACTTGGCCTTAGAAGTGAGACAGAGCAGACAGTACGGCATGCTTCTCCTGCCAGTGAAACTGGAATGCTTGTTGTGGAATCTGCGGTGCCGGGTGGTCCAGGCTATAAACATTTGGAACCGGGTGATGTACTTGTTCGTGTCAATGGTGAGGTCATCACTCAATTCCTGAAGCTGGAGACTATACTCGATGACAGTAGTTTAACTCTATTGGTGCAAGATTTGCACTCAATAACTCCAAATTATTTCTTGCAAGTTAGTGGAGCAATAATCCATCCTCTTTCATATCAGCAGGCTAGGAACTTCCGATTTCAATGTGGTCTTGTTTATGTGACAGAACCAGGATATATGCTCTTTAAAGCAGGACTATCAAGGGGGGGCTCGAGTACCATTGGAGTATATAAGCTATGTGGATCGTCATCGAAGGAAGTCGGTGTTGGTGACGGCTTGATCGCCAACGAATGGTATGCACCTCCCCAGATATACACTCGGGACGACAGTACTGGCCTATGGATTGCCAAGCCTGCTTTTCAGCCTGATTCCCCTTTTCTATCATCTGGGACTAAAGATGTTGGAAATCTGGCCAGCTGTCCAATTTCATTGACTGGTGAGCATGCTTGTGGGGGAGATGTGTCTGAAGGTAACCATCAGGAGTTGGTTGATGATGTCACTAGCATGGAAACTAATTATGAAGATCCTTCAGAGGCTGATATTTCCTTCAATGAATCCGAGGAAGCTAAGCTAGAAAAATCAGGTGCCATACAGGATGATGGGTTAATGGACTATCAAGGTGCAACTGCTGCCACAGCAAATGCATCGATCACTGAACGTGTGATTGAGTCTACTCTTGTGATGTTTGAGGTGCATGTTCCTCCATCTTGTATGCTTGATGGTGTTCATTCGCAGCATTTTTTTGGAACCGGTGTCATAATATATCAAACTCAAGATATGGGATTAGTTGCAGTTGACAAGAATACTGTTGCAGTATCTTCCTCTGATGTGTTGCTATCTTTTGCTGCTTTCCCCATTGAAATTCCTGGAGAGGTGGTATTTCTCCATCCTGTTCACAATTATGCTCTCATATCATATGACCCCATCTGCCTTGGGACCTGTTGGCGCTTCTCAGTGGTTCGTGCAGCAGAGTTACTTCCAGAGCCAGCATTATGCCGAGGAGATTCTGTTTACCTTGTGGGCTTAAGCAGAAGCCTTCAAGCAACTTCTAGGAAATCAGTTGTTACCAATCCTTGCGCTGCATTAAATATAGGATCTGCAGACTCCCCACGTTACAGAGCAACGAATATGGAAGTTATTGAACTTGATACTGATTTTGGTAGTTCATTTTCGGGTGTACTGACAGATGAACAGGGAAGGGTCCAAGCTTTATGGGGAAGCTTCTCTACTCAGAAGAAGAAAAAGAGAAGAAAGATGAAAACTGGGAAAAGACGAGACAAGACAATACTTACTTATACTTCAAAAGACTACCAGATGAATTCAAGTGTGGTTTTTGGGCTACTTAAAAGTGGTAGGGACCACCCATCCATATAA 2385 0.4553 MEDPSERLGSADLDSVSAVKTDDFSMEIDPPFQENAVTAEDWRKSLSKVVPAVVVLRITATRAFDTESASASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPSAIQFLNYEEIPLAPEGACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVGLNAGSKTTSASAFFLPLERVVRALRFLQKGSETYVDKWMAVSIPRGTLQVTFLHKGFDETRRLGLRSETEQTVRHASPASETGMLVVESAVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETILDDSSLTLLVQDLHSITPNYFLQVSGAIIHPLSYQQARNFRFQCGLVYVTEPGYMLFKAGLSRGGSSTIGVYKLCGSSSKEVGVGDGLIANEWYAPPQIYTRDDSTGLWIAKPAFQPDSPFLSSGTKDVGNLASCPISLTGEHACGGDVSEGNHQELVDDVTSMETNYEDPSEADISFNESEEAKLEKSGAIQDDGLMDYQGATAATANASITERVIESTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYQTQDMGLVAVDKNTVAVSSSDVLLSFAAFPIEIPGEVVFLHPVHNYALISYDPICLGTCWRFSVVRAAELLPEPALCRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSSFSGVLTDEQGRVQALWGSFSTQKKKKRRKMKTGKRRDKTILTYTSKDYQMNSSVVFGLLKSGRDHPSI 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01552 794 Gene3D - 279 354 IPR036034 GO:0005515
Vifa2g01552 794 SUPERFAMILY PDZ domain-like 304 381 IPR036034 GO:0005515
Vifa2g01552 794 Pfam Trypsin-like peptidase domain 74 220 - -
Vifa2g01552 794 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 15 405 - -
Vifa2g01552 794 SUPERFAMILY Trypsin-like serine proteases 40 244 IPR009003 -
Vifa2g01552 794 Gene3D - 146 260 IPR043504 -
Vifa2g01552 794 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Vifa2g01552 794 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Vifa2g01552 794 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Vifa2g01552 794 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Vifa2g01552 794 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Vifa2g01552 794 Gene3D - 29 140 IPR043504 -
Vifa2g01552 794 Pfam PDZ domain 305 353 IPR041489 -
Vifa2g01552 794 ProSiteProfiles PDZ domain profile. 269 351 IPR001478 GO:0005515
Vifa2g01552 794 Pfam PDZ-like domain 357 398 IPR025926 -
Vifa2g01552 794 SUPERFAMILY Trypsin-like serine proteases 574 747 IPR009003 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01552 K22686 - gmx:100809144 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01552 2 419547010 419568275 Vifa2g01552 2 419547010 419568275 ECH