Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01551 ATGAATGTTAACGGAAAGAGAAGCTATCATTCAATTTCATCTCCTTCCCCATCAGCCCCAATTCTTCAAAACAAGACAACACTCTCTCCATTACCATTACCGTTAGGCAAAACCAAATCCCTCTTCGAAATCATCTCCACAAACCCTTCCCTTTCCGTCGAAAAATCCCTCGAAGATTCCGGCATCGATGTCACACCACAAGACGTCGAACAAGTCCTCAAGCTCTCCTACCGCTTCCCCGCTCAGGCGGTCAAATTCTTCCGGTGGGCCGGTCACCGCATCAACCACAACCACACTCCCTACGCTTGGAACCTCGTGATTGACATTTTAGGTAAAAATCGTTTATTTGATGCAATGTGGGACGCTGTTAAATCCATGCGGCGAGAAGGGTTGCTTTCGCGGTCGACTTTTGCTTCGATTTTCGCTAGCTATGTTAATGCTGGGAGAATTGCTGATGCTGTTACGACTTTTGAGGTTATGGATGGGTATGGTTGTGTTCGGGATGTTGTTTCGTTGAATTCGTTGTTGAGTGCTGTTTGTAGTAGTGGTAGGACTATTGAAGCTTGTGATTATTTGCAAATTGGGAAGAAACTTGTTAGGCCGGATTCGGATACGTATGCGATTTTGATGGAGGGTTTGGAGAGTGATGGGAATGTTGTTGGTGCTAAAGAGACTTTTGCTGAAATGGTTATTGAGATTGGTTGGGATTCGGCTAATGTTCCGGCTTATGATTCGTTTCTTTGTACGGTGATTAAGGGGCCGGATGGAATTCGTGATGCGGTTAAGTTTTTTGATTCGATGAGAGATAGGAGATGTTATCCGGGGGTTAGGTTTTTTAGAGTTGCGCTTGATGAGTGTGTTAGGTTTCATGATATAAGGAGGGCGGAGTTTTTTTGGGATGTTATGTTGGGGAAAACCGCGTTGCAGCCGACGACAGCTATGTATAATTCGATGATTTCTTTGTATTGTTATCATGGTGATATTGATGCTGCTATGAAGATGCTTGATGGAATGGTTTATAAGGGGGCTTTTCCTGATTCGCTTACTTACAATTTGTTGTTTAGGTTTTTGATTAAAGGGAGGAAAACAAGGGAGGCGTCGAGGATGTTTGTGGAGATGCTGAAAAATGAGTGTTTGCCTGATCAACTTAACTGCGATGCGGCGGTTAAGCTTTATTTGGATAAGGGAGATCCTGTTATGGCTATCAAAATTTGGAAATGTTTGGTTGAGAATTACCGTGAGGATTTAGAGGATACTGCTAATCTGCTGGTTGTAGGGCTTCGAGATAATGATAGGGTCCCCGAAGCAGTTAAGTATGCTGAGCATATTATTGCTATCGGAATCAAATTAACTTCTTCTACATTGTCGAAGCTGAGACAAAGCCTTGTCAAAGAAAGAAAAGAATTTGTGTATGATGAACTTATAGCAAAGTGGAAAGCGGCCTATTAG 1449 0.4293 MNVNGKRSYHSISSPSPSAPILQNKTTLSPLPLPLGKTKSLFEIISTNPSLSVEKSLEDSGIDVTPQDVEQVLKLSYRFPAQAVKFFRWAGHRINHNHTPYAWNLVIDILGKNRLFDAMWDAVKSMRREGLLSRSTFASIFASYVNAGRIADAVTTFEVMDGYGCVRDVVSLNSLLSAVCSSGRTIEACDYLQIGKKLVRPDSDTYAILMEGLESDGNVVGAKETFAEMVIEIGWDSANVPAYDSFLCTVIKGPDGIRDAVKFFDSMRDRRCYPGVRFFRVALDECVRFHDIRRAEFFWDVMLGKTALQPTTAMYNSMISLYCYHGDIDAAMKMLDGMVYKGAFPDSLTYNLLFRFLIKGRKTREASRMFVEMLKNECLPDQLNCDAAVKLYLDKGDPVMAIKIWKCLVENYREDLEDTANLLVVGLRDNDRVPEAVKYAEHIIAIGIKLTSSTLSKLRQSLVKERKEFVYDELIAKWKAAY 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01551 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Vifa2g01551 482 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 46 467 - -
Vifa2g01551 482 Pfam PPR repeat 102 131 IPR002885 -
Vifa2g01551 482 Pfam PPR repeat 170 192 IPR002885 -
Vifa2g01551 482 Pfam PPR repeat family 310 356 IPR002885 -
Vifa2g01551 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Vifa2g01551 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Vifa2g01551 482 MobiDBLite consensus disorder prediction 1 23 - -
Vifa2g01551 482 NCBIfam pentatricopeptide repeat 136 169 IPR002885 -
Vifa2g01551 482 NCBIfam pentatricopeptide repeat 349 381 IPR002885 -
Vifa2g01551 482 NCBIfam pentatricopeptide repeat 101 131 IPR002885 -
Vifa2g01551 482 NCBIfam pentatricopeptide repeat 314 346 IPR002885 -
Vifa2g01551 482 Gene3D Tetratricopeptide repeat domain 240 423 IPR011990 GO:0005515
Vifa2g01551 482 Gene3D Tetratricopeptide repeat domain 77 239 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01551 Vifa-Chr2 419177257 419178705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01551 137 479 Glycosyltransferase AT1G05670 23.547 1.25e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01551 - - tpra:123894758 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01551 2 419177257 419178705 Vifa2g01551 2 419177257 419178705 ECH