Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01550 ATGGACGATGAAGTGCGGAAGATCTTCAACAAATTCGACAAGAACGGCGACGGGAAGATCTCGCGCGCGGAGCTCAAGGAGATGATGCTGGCGCTCGGATCTAAGACGACGTCGGAGGAAGTTAACCGGATGATGGCGGAGGTTGACCAGAACGGCGATGGTTACATTGATCTGAAGGAGTTTGGAGAAATTCACACTGCCGGCGGTGATGCTTCAGAGCTCCGGGAGGTGTTTGAGATGTACGATTTGGACAAAAATGGACTGATCTCGGCGAAGGAGCTGCACGCGGTGATGCGGCGGTTGGGGGAGAAATGTTCGCTCAGTGAGTGCCGGAAGATGATCGGAAACGTTGACGCTGATCGCGATGGTAATGTGAATTTCGAAGAGTTTAAGAAGATGATGAGTGGCTCCTAA 414 0.5217 MDDEVRKIFNKFDKNGDGKISRAELKEMMLALGSKTTSEEVNRMMAEVDQNGDGYIDLKEFGEIHTAGGDASELREVFEMYDLDKNGLISAKELHAVMRRLGEKCSLSECRKMIGNVDADRDGNVNFEEFKKMMSGS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01550 137 Gene3D - 1 67 - -
Vifa2g01550 137 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Vifa2g01550 137 CDD EFh 4 66 IPR002048 GO:0005509
Vifa2g01550 137 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Vifa2g01550 137 ProSiteProfiles EF-hand calcium-binding domain profile. 105 137 IPR002048 GO:0005509
Vifa2g01550 137 FunFam Calmodulin 1 1 67 - -
Vifa2g01550 137 SMART efh_1 109 137 IPR002048 GO:0005509
Vifa2g01550 137 SMART efh_1 4 32 IPR002048 GO:0005509
Vifa2g01550 137 SMART efh_1 73 101 IPR002048 GO:0005509
Vifa2g01550 137 SMART efh_1 40 68 IPR002048 GO:0005509
Vifa2g01550 137 Gene3D - 70 136 - -
Vifa2g01550 137 Pfam EF-hand domain pair 73 135 IPR002048 GO:0005509
Vifa2g01550 137 Pfam EF-hand domain pair 4 61 IPR002048 GO:0005509
Vifa2g01550 137 SUPERFAMILY EF-hand 3 135 IPR011992 -
Vifa2g01550 137 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Vifa2g01550 137 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Vifa2g01550 137 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Vifa2g01550 137 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 73 134 - -
Vifa2g01550 137 CDD EFh 73 135 IPR002048 GO:0005509
Vifa2g01550 137 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Vifa2g01550 137 FunFam calmodulin-like protein 3 68 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01550 Vifa-Chr2 417745576 417745989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01550 3 135 EF-hand Containing Proteins AT1G18210 54.887 3.77e-51 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01550 K13448 - gmx:100806813 240.736