Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01548 ATGGAAAAGCCACGGCGTTGCGGATTTTGCATTGCAGTGCCATGGGGCTGTCACGAGTTTAACGCTTTGGCCAGGCTAGCAGAAGAAATAGCCAAATCTGGTATTCCAGAAGGTTCGAGGAAGATCAATGGAAAGTACATTCATACTCACCTTGTTGCTAGATTAAAAGCTGTACATGAACAATTAAACGAGCAAATAAAGGATGTTGATGCGGCACAATCGAAGGAGGTTTCCGTGTTTTGGGTCGGCATGGCTGAGAGTGTGCAAATTATGGGCAGCTTTGATGGTTGGAGCCAAGGAGAGCACCTTTCACCAGAGTACACAGGTTCTTTCACAAGGTTCTCAACAACATTGATGCTCAGGCCTGGAAGGTATGAAGTCAAATTCTTAGTAGATGGTGAATGGCACCTATCAACAGAGTTACCTGTAACCGGTGAAGGGTTAACTAAAAATAATCTGTTAATTGTTGAGTGA 474 0.4409 MEKPRRCGFCIAVPWGCHEFNALARLAEEIAKSGIPEGSRKINGKYIHTHLVARLKAVHEQLNEQIKDVDAAQSKEVSVFWVGMAESVQIMGSFDGWSQGEHLSPEYTGSFTRFSTTLMLRPGRYEVKFLVDGEWHLSTELPVTGEGLTKNNLLIVE 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01548 157 CDD E_set_AMPKbeta_like_N 76 156 - -
Vifa2g01548 157 PANTHER PROTEIN PTST, CHLOROPLASTIC 19 157 - -
Vifa2g01548 157 Coils Coil 52 75 - -
Vifa2g01548 157 FunFam Protein PTST, chloroplastic 69 157 - -
Vifa2g01548 157 SUPERFAMILY E set domains 77 156 IPR014756 -
Vifa2g01548 157 Gene3D Immunoglobulins 67 156 IPR013783 -
Vifa2g01548 157 Pfam Glycogen recognition site of AMP-activated protein kinase 78 153 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01548 Vifa-Chr2 417566999 417571575 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01548 - - gmx:100806282 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01548 2 417566999 417571575 Vifa2g01548 2 417566999 417571575 ECH