Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01081 ATGGCGAAAGAAGAGTATCATCCATTGTTTGAGACAAGAAGAGGGAGTGGAAAGTTCATGTACATAACATTTTCTTTCTCAGTGTTTGTGGGAATTTGCTCTATTTGGATTTACAGATTGAATTACATATCCAAAGAGTTTGAAGATGGAAACTGGATTGTTTGGATTGGATTGCTTTTTGCTGAACTATGGTTTGGTTTTTATTGGTTCCTTCATCAAAACCTTAGATGGAACCCTATTTTCAGGCAACCCTTACCTCAAGTACTCTCACAAAGCAGATATGAGCATATGTTGCCAAAAGTGGATATATTTGTGTGTACTGCAGATCCAGAGATTGAGCCACCAATAATGGTGATAAACACGGTGTTATCTGTGATTGCTTATGATTATCCAGCAGAGAAGCTTAGTGTGTATCTTTCAGATGATGCTGGATCAGATGTTACATTCTATGCTATGTTAGAGGCGTCTGAATTTGCAAAACATTGGTTACCATTTTGCAAGAGATTCAAGGTTGAACCTAGGTCACCAAATGCATATTTCAAGACTGTTAACTTAGATATTTACCCAAATGATGCTAAAGAAGTTTTCGCCATCAAGAAATTGTATCAAGAAATGGAAAGTCGAGTAGAAAATGCATCAAAGCTTGGTAAAGTACCAAAGGAAGCATACTCAAACTATAAAGAATTTTCTCAGTGGGATTCTTATTCATCTAAGCGTGATCATGACACAATTCTTCAAATTCTACTTCATAGAAAGGACTTGAATGCAAGAGATGAAGATGGATTTGTTATGCCCACCTTGGTATATATGGCTCGTGAGAAGAGACCTCACTTTCCACATAACTTCAAAGCCGGAGCCATGAATTCATTGATAAGAGTGTCATCAATGATCAGCAATGGGAAAATCATTCTGAATGTAGATTGTGACATGTACTCAAACAATTCACAATCTTTAAGAGACGCACTTTGCTTCTTCATGGATGAAGATAAAGATGGATTTGGTGGGCCCATGTATATTGGAACTGGCTGCTTTCACAGAAGAGATGTACTCTGCGGAAGAAAGTTTGATAAACAATACAGAAATGATTGGAACAACAATGCAAATGAAGAAAATATTAACCATATGATAGAAGCAAGTTTGCAAGATATGAAAGAAAAATCAAAGCCTCTTGCAAGTTGTACCTATGAGGAAAACACATCTTGGGGAAAAGAGATGGGACTACTTTATGGTTGTGCAGTGGAGGATATAGTGACAGGATTATCTATTTTATGTAAAGGATGGAGATCAATTTACTATAATCCAACAAGAAAAGCTTTTTTAGGTTTGTCTCCAACCACATTGCCAGAAGCACTTGTTCAACATAAGAGATGGTCTGAAGGAGGTTTTCAAATTTTGCTTTCTAAGTTCAGTCCTGTTTGGTACGCTTATGGATTGATAAGTCCAGGTCTTCAACTTGCATATTGTCATTACAATATGTGGGTGCTTAACTCCTTTCCAACTCTATATTATTGCATCATCCCTTCACTTTTTCTCCTCAAAGGCATTCCCTTGTTTCCACAGATTTCAAGTCCATGGTTCATACCTTTTGCCTATTTGATAGTTGGTAATTCAACCTACTCTTTGGTAGAGTTTTTGAGGGTAGGAGGAACAATCAAGGGTTGGTGGAATGACTTAAGAATGTGGCTATACAAAAGAACAAGTTCATACCTTTTTGCTTTTGTTGATACCATGCTGAAGTTAATAGGTTTCTCAAATTCAGGCTTCATAATATCTACTAAGGTAGCCGAGGAAAATGTTTCTCAAAGATATGAGAAAGAGATTATGGAGTTTGGAAACTCTTCTCCAATGCTCACTATATTGGCTACAATTGCAATGCTGAATTTGTTTTGTCTTGTTGGGGTTTTGTTAAAGGAAGTTGTGTTAAGCGGAAAAGGTTATGGAATATTTGAGACAATGTTGTTGCAAGTTTTACTAAGTGGTGTGTTGGTTGTTCTTAATATTCCTATTTATCAAGGACTTTTTATGAGGAAAGATAAGGGAAGAATGCCAATATCTGTTGCAGTTAAATCAACAACATTAGCTCTAAGTGCATGTGTTCTCTTTAGTGCTCTTGGTTAA 2118 0.3654 MAKEEYHPLFETRRGSGKFMYITFSFSVFVGICSIWIYRLNYISKEFEDGNWIVWIGLLFAELWFGFYWFLHQNLRWNPIFRQPLPQVLSQSRYEHMLPKVDIFVCTADPEIEPPIMVINTVLSVIAYDYPAEKLSVYLSDDAGSDVTFYAMLEASEFAKHWLPFCKRFKVEPRSPNAYFKTVNLDIYPNDAKEVFAIKKLYQEMESRVENASKLGKVPKEAYSNYKEFSQWDSYSSKRDHDTILQILLHRKDLNARDEDGFVMPTLVYMAREKRPHFPHNFKAGAMNSLIRVSSMISNGKIILNVDCDMYSNNSQSLRDALCFFMDEDKDGFGGPMYIGTGCFHRRDVLCGRKFDKQYRNDWNNNANEENINHMIEASLQDMKEKSKPLASCTYEENTSWGKEMGLLYGCAVEDIVTGLSILCKGWRSIYYNPTRKAFLGLSPTTLPEALVQHKRWSEGGFQILLSKFSPVWYAYGLISPGLQLAYCHYNMWVLNSFPTLYYCIIPSLFLLKGIPLFPQISSPWFIPFAYLIVGNSTYSLVEFLRVGGTIKGWWNDLRMWLYKRTSSYLFAFVDTMLKLIGFSNSGFIISTKVAEENVSQRYEKEIMEFGNSSPMLTILATIAMLNLFCLVGVLLKEVVLSGKGYGIFETMLLQVLLSGVLVVLNIPIYQGLFMRKDKGRMPISVAVKSTTLALSACVLFSALG 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01081 705 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 239 444 IPR029044 -
Vifa2g01081 705 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 90 198 IPR029044 -
Vifa2g01081 705 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 8 329 - -
Vifa2g01081 705 SUPERFAMILY Nucleotide-diphospho-sugar transferases 103 524 IPR029044 -
Vifa2g01081 705 FunFam Cellulose synthase isolog 91 186 - -
Vifa2g01081 705 Pfam Cellulose synthase 390 701 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vifa2g01081 705 Pfam Cellulose synthase 101 329 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01081 Vifa-Chr2 291678634 291682710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01081 7 704 Glycosyltransferase AT1G55850 52.103 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01081 - - gmx:100785532 1067.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01081 2 291678634 291682710 Vifa2g01081 2 291678634 291682710 ECH