Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01079 ATGAAGCCGCGAAAACTATATTCTCTGGCACTCTCACGTGCTCTATCACGTGCCCTAACCTCTTCAACCACACCGTCTCAATGCGCGTTTCCCTTGAAGACGGTTACCGTCGCAAACTTTGAGCCGTCGTTAGAGGAGCTCCGGCACCATGTCCGATCGTCAGACTTCGTCGCCATCGACCTTGAGATGACCGGCGTAACTAGCTCTCCTTGGCGTGAGTCCTTCGAGTTTGACCGCTCCGACGTCAGGTATCTCAAGATCAGAGACTCCGCCAGCAGGTTCGCCGTCGTTCAGTTCGGCGTTTGTCCGTTCCGATGGGATTCATCCAACCAGTCATTCGTAGCTTATCCGTACAATTTCTATGTTTTCCCACGTCAGGAGCTTGCTGGTTTCGGCCCATGTAATGAATTTCTTTGTCAGACTACTTCGATAAATTTCTTGGCTAAATACCAGTTTGATTTCAATGCGTTCATACATGAAGGAATATCTTATTTGTCCAGAGAACAAGAAAAGGAAGCAATAAGGAGTTTGAATTCAATGCATGATAGTGAGTGTTCAAACATTTCTAAATTAAATGATGTTAGGGACCTACCATCTATCAACATGGCAGACATTTTGTTCACTGAGCGAATGAAAAATAAGTTTAGTGAGTGGCGTGATGGATTATTACAGGAGCAAAGTCAACCAAACCAAATTCAAGGAACTAGAAAAGACTCGAAACAACGATTTGACGTGATTTTCTTTAAGAAGCATCCAGCTCTCAAGCTTGATGGATTCACCTCACGCCAGCTTAAGTTAGTTCAGTTGGTCATCAAAAAACACTTCAAAGATCTTTCTTATATCAAAGTGAACAATGCAGGTTCTAGTTCCCAACAAATAGTTGTATATACAGACTCGGAGGAGGAACTAAACTTACTTTTGAAGGAGGTAAACGAGGAAAATCACAGGGCCAAAAAGATGAAGATCCAAGCTGCAGTTGGATTTCGCCATGTTATTGATCTCCTTTCGTCAGAACAGAAGTTGATAGTTGGTCATAACTGTTTCCTAGATATTGCTCATGTGTACAACAAATTTATCGGTCATCTTCCTGGGACTCCTGAAGAGTTTGTTGCCTCTGTTAACAAGTGCTTTCCACATATTGTTGACACCAAATTACTCATGAACACTGATAATATGCTCCAAGTCAGAATGAAAAAGTCCAGAAATTCGCTGGGCTCTGCATTTTCTATGTTTTGTCCACAAATTGCTGCAGGCTCCAAAAGCACTGAGCTAGTTTCACCATCCCATGTAAAAATAGATGTTGAAGTTGATGATTCAAGATTGTCTAGCTGGAATCCTGGAGGCAAGCATGAGGCAGGATATGATGCTTTCATGACTGGATGCATCTTTGCCCAGTTATGCTGTGATTTAGGAGTTGATTTTAAACTCCATGAATCTTTAAAATTAGCTACCAATGAGAAACTACAGAAATACATTAATCATCTATATCTTAGTTGGATGCATGGGGATATTATTGATCTAAGTACTGGTGATAAGGTTGCAAATTCTTCACCAAGCTATAGCCCCAAAAGACGGTACCCGAATATTTTGTTTGAGAACATAGTTATTATATGGGGATTTCCTTCTAACGTGAAATCAAGCGATGTACGAGAGTGCATATCTAAAGTGTTTGGTTTAACTTCTGTAGTTTCTGTATACCAATTGGATGCAACTGCAGTTTTCGTTCAGTTTAGCAAGACTGAACAAGTTTCCGACTTTCTTTCGTTGAAGGAAAACTTAGAGAGAAGTAATGGTCCAATCTCGGTTTTGCATCCGCTGGCAAAACTTTTGGATGGTGGAAATACATGTGCTGCTAATTATGATACTTATAAAGAAATATGTGGTTCACCCTTGTCACAAGATTTATTTGCTGATCAGGCAAATGCAGTTACCATGACGCCGAAGAGTAAATTGATTGAATTTAAGGTAGCATTGAGGAGTGAAGAACATGAAAATCCAAGTCTACAAGATAATGTAAATGATGTTGCTGTGAATTTTGTAGAAAAAATCAAGCCAAACTCAATTGATCAGTTAAGAAATGTTCAATCTACTGGGCAAGCCTCCCCATTTGAGATTGAAGATTCCCGTGTTGCAGAAGCTAACTTGTGA 2148 0.4046 MKPRKLYSLALSRALSRALTSSTTPSQCAFPLKTVTVANFEPSLEELRHHVRSSDFVAIDLEMTGVTSSPWRESFEFDRSDVRYLKIRDSASRFAVVQFGVCPFRWDSSNQSFVAYPYNFYVFPRQELAGFGPCNEFLCQTTSINFLAKYQFDFNAFIHEGISYLSREQEKEAIRSLNSMHDSECSNISKLNDVRDLPSINMADILFTERMKNKFSEWRDGLLQEQSQPNQIQGTRKDSKQRFDVIFFKKHPALKLDGFTSRQLKLVQLVIKKHFKDLSYIKVNNAGSSSQQIVVYTDSEEELNLLLKEVNEENHRAKKMKIQAAVGFRHVIDLLSSEQKLIVGHNCFLDIAHVYNKFIGHLPGTPEEFVASVNKCFPHIVDTKLLMNTDNMLQVRMKKSRNSLGSAFSMFCPQIAAGSKSTELVSPSHVKIDVEVDDSRLSSWNPGGKHEAGYDAFMTGCIFAQLCCDLGVDFKLHESLKLATNEKLQKYINHLYLSWMHGDIIDLSTGDKVANSSPSYSPKRRYPNILFENIVIIWGFPSNVKSSDVRECISKVFGLTSVVSVYQLDATAVFVQFSKTEQVSDFLSLKENLERSNGPISVLHPLAKLLDGGNTCAANYDTYKEICGSPLSQDLFADQANAVTMTPKSKLIEFKVALRSEEHENPSLQDNVNDVAVNFVEKIKPNSIDQLRNVQSTGQASPFEIEDSRVAEANL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01079 715 Pfam CAF1 family ribonuclease 35 463 IPR006941 -
Vifa2g01079 715 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 35 628 - -
Vifa2g01079 715 SUPERFAMILY Ribonuclease H-like 33 474 IPR012337 -
Vifa2g01079 715 Coils Coil 296 323 - -
Vifa2g01079 715 Gene3D - 34 199 IPR036397 GO:0003676
Vifa2g01079 715 Gene3D - 283 512 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01079 Vifa-Chr2 290916131 290921001 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01079 K01148 - gmx:100784997 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01079 2 290916131 290921001 Vifa2g01079 2 290916131 290921001 ECH