Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01070 ATGCACCGACCATCAACAATGGTAGCCTTCACGGCGGCGCTTTTAATCCTCTCCGCCGTTTTCACAACCTCCACCGCACACAACATCTCACACATTCTCTCCCAAAACCCCGACTTCTCCACCTTCAACCACTACCTAACCCTAACTCACCTCGCCTCCGAAATCGACCGTCACACAACAATCACCGTCCTCGCCGTCAACAATGCCGCCATGGACGACCTCATAGCAAAAGACCTCCCGATCTACACAGTTAAAAACATCCTCTCTCTCCACGTCCTCGTCGACTACTTCGGAGCCAAAAAGCTTCACCAAATCACTAACGGAACCGCTCTCGTCTCCACATTGTACCAAGCCACAGGCTCCGCACCGGGAGCCTCGGGATTAGTCAATATCACCGATCTTCGCGGCGGAAAAGTCGGATTCGGCGCTAATGACAACGAAGGAACCCTACCTGCTTTCTACGTCAAATCTATTGAAGAAATTGAGAACATCATTTCGGTTATTCAGATTAGTCAAGTACTCCCCTCCGCCGCAGCGGAAGCTCCTACACCACCACCTAAGCAACAAAACCTCACCGCGATTATGTCCAAACACGGTTGCAAAATCTTCGCCGACACTCTTTTTGCCTCACCCGAAGCTTCCCACATCTTCACAGACAATCTCGAGGGTGGGTTAACTATTTTCTGTCCCGCCGACGACGCTTTCAAAGGCTTTCTCCCGAAATTCAAAAACCTAACCGCCGCCGGTAAAATCGCTCTGCTCGAATTTCACGGCGTGCCGATTTATCAATCTATTGCTAATCTGAAATCCAACAACGGAGTTATGAACACTCTTGCTACCGACGGTGCTGAAAAGTACGATTTCACTGTTCAGAACGACGGTGATGAGATCACGTTGAAGACAAAGTTTGTAACTGCTAAGATCACCAACACGATCATCGACGAACAGCCGCTTGCTATTTATACTATCTCTAAGGTTCTTCTTCCAGAGGAACTGTTTCAAGGTAAAGCTCCGAGTCCTTCTCCGGCGCCAGCGCCGGAGCCTGCAGCTGCTGACGCTCCCGCTCCTGCGGAGGAGCATAAGAAGAAGAAGAAAAAGAAGGCGGCTGATGCGCCGAGTGATGATGATTCTGATTCGCCGGCTGATTCTCCCGAAGATGCAGCTGATGATGTTGCTGACGACGATAACGGCGCCGTTAGGTTTGGCGGAATCGGAGTTTTGGCTTTGGCTGTCGGAATTCTATTGCTGTGA 1251 0.5044 MHRPSTMVAFTAALLILSAVFTTSTAHNISHILSQNPDFSTFNHYLTLTHLASEIDRHTTITVLAVNNAAMDDLIAKDLPIYTVKNILSLHVLVDYFGAKKLHQITNGTALVSTLYQATGSAPGASGLVNITDLRGGKVGFGANDNEGTLPAFYVKSIEEIENIISVIQISQVLPSAAAEAPTPPPKQQNLTAIMSKHGCKIFADTLFASPEASHIFTDNLEGGLTIFCPADDAFKGFLPKFKNLTAAGKIALLEFHGVPIYQSIANLKSNNGVMNTLATDGAEKYDFTVQNDGDEITLKTKFVTAKITNTIIDEQPLAIYTISKVLLPEELFQGKAPSPSPAPAPEPAAADAPAPAEEHKKKKKKKAADAPSDDDSDSPADSPEDAADDVADDDNGAVRFGGIGVLALAVGILLL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01070 416 Gene3D FAS1 domain 168 330 IPR036378 -
Vifa2g01070 416 SUPERFAMILY FAS1 domain 32 163 IPR036378 -
Vifa2g01070 416 Gene3D FAS1 domain 24 167 IPR036378 -
Vifa2g01070 416 MobiDBLite consensus disorder prediction 354 374 - -
Vifa2g01070 416 MobiDBLite consensus disorder prediction 335 395 - -
Vifa2g01070 416 Pfam Fasciclin domain 218 329 IPR000782 -
Vifa2g01070 416 Pfam Fasciclin domain 37 106 IPR000782 -
Vifa2g01070 416 ProSiteProfiles FAS1/BIgH3 domain profile. 187 327 IPR000782 -
Vifa2g01070 416 SUPERFAMILY FAS1 domain 183 330 IPR036378 -
Vifa2g01070 416 ProSiteProfiles FAS1/BIgH3 domain profile. 26 174 IPR000782 -
Vifa2g01070 416 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 9 394 IPR033254 -
Vifa2g01070 416 MobiDBLite consensus disorder prediction 375 392 - -
Vifa2g01070 416 FunFam Fasciclin-like arabinogalactan protein 2 25 167 - -
Vifa2g01070 416 FunFam Fasciclin-like arabinogalactan protein 10 180 330 - -
Vifa2g01070 416 SMART fasc_3 62 177 IPR000782 -
Vifa2g01070 416 SMART fasc_3 226 330 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01070 Vifa-Chr2 288134663 288135913 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01070 - - cam:101502229 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01070 2 288134663 288135913 Vifa2g01070 2 288134663 288135913 ECH