Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00940 ATGGTTCAGGTCGCTAAACGGAAGAAAGGAAGGCCGTCGAAGGCGGATCTAGCTCGCCGTGCCGCCGAAGCTCAAGCCTCCGCAACGGAATCCGATTCCCGCCGTAGCCTCCGCCGCAAGAACGTCAGGTACAACATAATCGACTACGACGGCGATTACATCGACGACGAAGAAGATGAGAGGAGGAGAGAGAAGAAGAAGCTCAAATTGATGACGAAGCTACACCAAGGTGAACAAGAGCAAGAATCTGAAGATCACGCGCCAACGGAAGAAGAAGAAGAGTGCAATGAAATTGAAGGAGAAGTAGAGAATGAAGAAGAAGAAGAAGAAAAAGAAAAGCATGAAGAAGATGCTGTGATAAAGGGAACAAAAGTGGATTCAAAAGGGCTCCACTCAATTTCTGTTTCAGGTTTGTTTAATCTTTTATTGATAGGAACTCCGGCGAATTATCCGCATGGGATTCCGTTGCCTGATAGGAAGATATTGGAATTGATTCTCGACAAGCTTCAGAAGAAGGACATATATGGCGTGTTTGCAGAGCCAGTTGATCCAGAAGAGCTTCCTGATTACCACGATGTCATTGAGCATCCCATGGATTTCACCACGGCGAGAAAGAAGTTGGCGAATGGATCTTATCCTACCTTAGAACAATTTGAGAGTGATATATTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCGGAGACTGTATACCACAGACAGGCACGAACAATACAAGAACTTGGCCGGAAGAAGTTTGAAAAGTTAAGGATTAAATTCGAACGTACTCAGGTTGAGCCAAAATCAGAACAGAAAACACAATCTAGTTCTTCGGTTAAGAAGTCATTGAAAAAGCCACCGGGTTGGGCCTCACAAGAATCTGTTGTCTTTGATTCATCCTATGGAGATGTACAACCAACTTCCTATCCAATGCAAGGTGGTAGTAGCTGTGAGAGGCCTGGCACCATTGATGGTATTGTGGAGGGGAATGCTTTCTTTATTGATGCAAATCACGATAAAGCTGAAGATGTTTTATCAGGGAAGAATATTCTCTCTAAGATGGGAAGGAAGTCATTTGTGCTTGACGAGAATCGTCGTGGATCTTATAATACGTCTAATCAACTAACCACTAGACCTGATTCAATATGTATGACCTTTGAGAGTGGAATGAGGCAGCTGGTTACTGTTGGCGTCCATGCTGAATATTCCTATACTAGGAGTTTGGCTCGTTTTAGTGCATCTCTAGGACCCATTGTTTGGAAAATTGCTTCCCAAAGGATTCAACAGGCACTTCCTGCCGACTGTAAATTTGGTCGTGGCTGGGTTGGAGAGTATGAACCGATTCCAACCCCAATATTTAAGCTTGCTAATCATCTACAGAAGGAAACTAGTTTGATTTCAAAGTCGAATGATGACAAAAATTGTAAGGACGAGGAACCTAAAACTGAACATCCTGTAAATGGATGGATGGTTGAGGGAAAGCAATTTTCAGATTGTCCTGCCAGTGGGCCTGCATTAGAAGGAAATCCTTCTATTGGTTCCGCTGGAGTGAAGCCCAATGCTTCTCCTCCCAACATCCCAAATCAGCAGAATTCCCATTCTAGGAATTTAGGCATACCTGAGAATAAGAGTTTGAAGAAAGTGGAGCTGGAATCTTTACCCTCAAGTAATCAAAATAATTCCAGTCTAGTTGCTAAGTTTGGAAATAATGCTCCTATAACAGAGTCTAAGACCAAAGAGATGGCGCCTAGGAACTTGAAAACTTTGCGATCTACAAATTTCAAGCAGCCAGATACTAATGAAGTTGTCGGTGGAGACTTGCCTGATGCGAAAGTCATGAATACAAGCTTGAATAATCGGTCAACCCATCCATCATCAGATAGTACCTCAAACCAAACAACCAGAGCAGATCCTTTTCTTTTCTGTGGGCAAGAGCAGGGTTTTAGTGATCCAGCTAAGTCAATAAGAACGTTCAAAGAAGAGGCTCAAAAGCCGCAGACTTCTCACCATTCACCAGTTGATACTCTTCCGCAAATACCATCAGCTCCATCTGCGCTAAGAGATGCCTCAGGCAATGCTTCAGCAGCAGCTGCTCAGACATGGATGTCTGCAGGGGCAGGAGGGTTTAAACTAAGACCTGAGAATTCTGGTTCATCCAAAAATCAGATTTCTGCAGATTCTCTTCACAACTCAACAAGAGAGTTCCATCAGCATATTTCTCGAATTCAGGGAGAGTTTCCTTCCGGTGGAATGTCTTTCCAGTCTAATAAGAACAATTTTCCATTTCATTCCCCTAGACCTCAACCTAGTCATGTAGATGCCGTTTCACAGTTTCCCAAGCGGCCTATGGTTATCCCACAATCAGCATCCGCAGACCAATCTAGATTTCAAATGCAGACCTCTTGGCAGGGTCTCAGTCCTCAAAGCCAACCAAGGCAGAAACAGGAAACTCTTCCGCCTGACTTGAATATTGATTGTCAATCTCCAGGGTCACCTGCAAAACAATCTTCTGGTGCCGTTGATTCACAGCAACCAGACCTAGCTTTGCAACTATGA 2559 0.4369 MVQVAKRKKGRPSKADLARRAAEAQASATESDSRRSLRRKNVRYNIIDYDGDYIDDEEDERRREKKKLKLMTKLHQGEQEQESEDHAPTEEEEECNEIEGEVENEEEEEEKEKHEEDAVIKGTKVDSKGLHSISVSGLFNLLLIGTPANYPHGIPLPDRKILELILDKLQKKDIYGVFAEPVDPEELPDYHDVIEHPMDFTTARKKLANGSYPTLEQFESDIFLICSNAMQYNAPETVYHRQARTIQELGRKKFEKLRIKFERTQVEPKSEQKTQSSSSVKKSLKKPPGWASQESVVFDSSYGDVQPTSYPMQGGSSCERPGTIDGIVEGNAFFIDANHDKAEDVLSGKNILSKMGRKSFVLDENRRGSYNTSNQLTTRPDSICMTFESGMRQLVTVGVHAEYSYTRSLARFSASLGPIVWKIASQRIQQALPADCKFGRGWVGEYEPIPTPIFKLANHLQKETSLISKSNDDKNCKDEEPKTEHPVNGWMVEGKQFSDCPASGPALEGNPSIGSAGVKPNASPPNIPNQQNSHSRNLGIPENKSLKKVELESLPSSNQNNSSLVAKFGNNAPITESKTKEMAPRNLKTLRSTNFKQPDTNEVVGGDLPDAKVMNTSLNNRSTHPSSDSTSNQTTRADPFLFCGQEQGFSDPAKSIRTFKEEAQKPQTSHHSPVDTLPQIPSAPSALRDASGNASAAAAQTWMSAGAGGFKLRPENSGSSKNQISADSLHNSTREFHQHISRIQGEFPSGGMSFQSNKNNFPFHSPRPQPSHVDAVSQFPKRPMVIPQSASADQSRFQMQTSWQGLSPQSQPRQKQETLPPDLNIDCQSPGSPAKQSSGAVDSQQPDLALQL 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00940 852 Coils Coil 88 117 - -
Vifa2g00940 852 SMART bromo_6 151 259 IPR001487 GO:0005515
Vifa2g00940 852 SUPERFAMILY Bromodomain 148 257 IPR036427 GO:0005515
Vifa2g00940 852 MobiDBLite consensus disorder prediction 748 766 - -
Vifa2g00940 852 PRINTS Bromodomain signature 187 203 IPR001487 GO:0005515
Vifa2g00940 852 PRINTS Bromodomain signature 173 186 IPR001487 GO:0005515
Vifa2g00940 852 PRINTS Bromodomain signature 203 221 IPR001487 GO:0005515
Vifa2g00940 852 PRINTS Bromodomain signature 221 240 IPR001487 GO:0005515
Vifa2g00940 852 CDD Bromodomain 158 254 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 788 852 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 466 540 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 660 694 - -
Vifa2g00940 852 Gene3D - 157 279 IPR036427 GO:0005515
Vifa2g00940 852 MobiDBLite consensus disorder prediction 615 636 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 1 41 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 466 486 - -
Vifa2g00940 852 PANTHER BROMODOMAIN CONTAINING PROTEIN 6 851 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 516 540 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 84 113 - -
Vifa2g00940 852 Pfam Bromodomain 164 244 IPR001487 GO:0005515
Vifa2g00940 852 MobiDBLite consensus disorder prediction 745 775 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 265 292 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 70 117 - -
Vifa2g00940 852 ProSiteProfiles Bromodomain profile. 170 240 IPR001487 GO:0005515
Vifa2g00940 852 Coils Coil 54 74 - -
Vifa2g00940 852 MobiDBLite consensus disorder prediction 787 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00940 Vifa-Chr2 250275508 250280789 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00940 K22184 - gmx:100792844 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00940 2 250275508 250280789 Vifa2g00940 2 250275508 250280789 ECH