Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00898 ATGGATGATTACGCAAAAATGGATGATTACGCAATTGCGGCGTTTCAAGACCTAGTAATGGAAGAGAAATGGGAACAAGTAATTGAAAAATACAATCAAGATAGCAACTATCACAACATAATAATCAAGAGAAGAGGAACTGCGTTACATGCGGCAATAAGCAGTGGGCACAAATGTGTAGTGAATAGTCTTGTAGATGCAATAATAAATCTTTATAATGTAAGAAGTTTGAGAATAATGAATGAAAGAGGTGCTACTCCTCTTCACATTGCAGCATCTATAGGATTCACTGATGTGTGTGAACTTATAATTGGAAAAGAAGGTGAAAGGAAATATTTGATTCAAGAAAAAAATGCAAATGGAGAAACACCACTTTTTTGGGCTGTGCTTGCTCGTCAAATATTAGTGTTTGATTACCTACAACAGTTTTATCCTCTTGACCTCAATATTGCCATCGATAAGAATAATACTAGTATCCTTCATCTTGCCCTTAGGAAAGAAATGTTTGATTGGGCAATTATAATAATGTATTGCTACAGAGGTCTTATCTCTATGAAAGACAAGGATGGCAATATTCCTCTTGAAATTCTTGCTACTAAGACATCAGCCTTCAAGAGTGAATGTCGTCTATCATGGTGGAAGGAAATTTTATACTACTGTGTTCCTATAAGCTTCTACAACGGAAAAGATGAAGTGGAATTGCATTTAAAGAATGTTATATTGAAAGAAAAAACAAAGAATGAGAAAGATGAATATAGTGAAGTAGCAATACATTTACACCACAACGAGGGATTTGAAAACACAGACAGAATACGGCTTTCTATTACTCAATTAATTCTTCACATTCTAAAGTTAGTATTCATATGGCCGATCATGTCACTATTTGATTTACATGCAATAAAGAATAGTAAGAAGAAGCACATATATGGTGGTTGGATCTTGAACGAATTTATGAAAAAACCTATGGAGTCATACATGGATGGCGGGGATGATCCAACAGGTGACATAGAATATGATAGACAAATGAAAGATGATTTTCGTGAGTTTATCAATCGCGCACGGGAAGGAGGCAATTCCTCAATGCAAGAGACAAAAGAATACAAAGAAATGGAAGATTTAGAAAATATTGATGTGAAAGATAAAACATTTTTTGCAGCAAAAGAAATATCCAGAGAAGAAATTATGGAAGAGCTTAATTCTAAAGTACCAATTACATTTGATAAGAAAGGTTTGATACTTGTTGCAATGAAGAATAATAAAACGGAATCATCAGAAGAGGAAAGTCCAGCAAAACATACAGCGTATTTGATTGCACATATACTTCAGTCGAGACAAAAATATGAGTACATTAAAAACCTAGTACCAGAGCATTTCAATATTTTAGGCAATAAAAAAGGAAAAATTCCAAGTGAAATCTTTGAGGAGCAACACACAGAAATTCTAAAAGAAAATGTTGAGTGGTTGAAAAACACAACAGAGTCATACTCAGTTGTAGCAGCTCTCATTGCTGGTGTCGCCTTTGCGACATCAGGTAGTGTACCTGGTGGCAATCAACCAACAGGAGAACCAGCATTAAAAGGACAACAGGGATTTGAAGTATTTGCTACAACTTCGTTAATTGGACTTTACTTCTCCGTCACTGCGCTCATCATGTTCCTTTCTATACTCACTTCTAGAAAAGAAGTCAACCAGTTTCGTCTAAACTTGCCAATGAAGCTTCTTTTCGGCTTGAGTTCTCTCTTTGTATCCATTGTTGCCATGTTTGTTTCTTTTTGTGCAGGACATTTCTTTGTGCTCACAGATAAATATACAAACGGAGGTGTCTTGTTCTATTTATATATTTTCATTTGCTTGCCTGTCATATTCTTTGCAGCTGTGCATTTTCATTTGATCGTTGATCTTTTTAAAATTATTTTGATAAAGTCTCCACCAGATACTGTTAAGGGGTTTCTTCACTAG 1959 0.3502 MDDYAKMDDYAIAAFQDLVMEEKWEQVIEKYNQDSNYHNIIIKRRGTALHAAISSGHKCVVNSLVDAIINLYNVRSLRIMNERGATPLHIAASIGFTDVCELIIGKEGERKYLIQEKNANGETPLFWAVLARQILVFDYLQQFYPLDLNIAIDKNNTSILHLALRKEMFDWAIIIMYCYRGLISMKDKDGNIPLEILATKTSAFKSECRLSWWKEILYYCVPISFYNGKDEVELHLKNVILKEKTKNEKDEYSEVAIHLHHNEGFENTDRIRLSITQLILHILKLVFIWPIMSLFDLHAIKNSKKKHIYGGWILNEFMKKPMESYMDGGDDPTGDIEYDRQMKDDFREFINRAREGGNSSMQETKEYKEMEDLENIDVKDKTFFAAKEISREEIMEELNSKVPITFDKKGLILVAMKNNKTESSEEESPAKHTAYLIAHILQSRQKYEYIKNLVPEHFNILGNKKGKIPSEIFEEQHTEILKENVEWLKNTTESYSVVAALIAGVAFATSGSVPGGNQPTGEPALKGQQGFEVFATTSLIGLYFSVTALIMFLSILTSRKEVNQFRLNLPMKLLFGLSSLFVSIVAMFVSFCAGHFFVLTDKYTNGGVLFYLYIFICLPVIFFAAVHFHLIVDLFKIILIKSPPDTVKGFLH 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00898 652 Pfam Ankyrin repeats (3 copies) 38 105 IPR002110 GO:0005515
Vifa2g00898 652 Gene3D - 11 213 IPR036770 -
Vifa2g00898 652 PANTHER CASKIN 44 637 - -
Vifa2g00898 652 Pfam Domain of unknown function 486 598 IPR026961 -
Vifa2g00898 652 ProSiteProfiles Ankyrin repeat profile. 83 104 IPR002110 GO:0005515
Vifa2g00898 652 ProSiteProfiles Ankyrin repeat region circular profile. 83 104 - -
Vifa2g00898 652 SMART ANK_2a 83 112 IPR002110 GO:0005515
Vifa2g00898 652 SMART ANK_2a 120 150 IPR002110 GO:0005515
Vifa2g00898 652 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vifa2g00898 652 SUPERFAMILY Ankyrin repeat 17 198 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00898 Vifa-Chr2 234440952 234444655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00898 486 618 Miscellaneous Gene Families AT5G50140 27.737 1.51e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00898 - - tpra:123917168 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00898 2 234440952 234444655 Vifa2g00898 2 234440952 234444655 ECH