Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00897 ATGGCATATAATTTTTCCACCCTAAGCGAAGCTCAATTTTCTAATTCTGAAGAAGCTATGAGGTTCAGTCAGCTAGTAATGGATGAAAATTGGCCAGATGTAATTGAAAAATTCGAAGAAGATAGTTATTTTCACAAGATAGAAATCAAGGGAAGAGGAACAGCGTTACACGTGGCAGTAAGCAGTGGACTCAAAGAAGTAGTGAAATGTCTTGTAAAAGAAATAATAAAACATCTTGATGAAACTAGTTTGAGAATGATAAATGAAAGAGGTGCTACTCCTCTTCACCTTGCAGCAAATGCAGGATACAAAGATATGTGTGAATTGATAATCGGAAGAGATGGTGAAAGGAAATATTTGATTCAAGTGGAAAATGAGAATGGAGAAACACCGCTTTTTTGGGCTGTGCAAGAACGTCAAACAATAGTGTTTCTTTACCTACGACAATTTTATCCTACTGATTTCAGTATTGCAATCAATAGGAATAATACTAGCATCCTTCATGTTGCCATTCAGAGAGAAATGTTTGATTTGGCAATTATAATAATTTACAACTACGAAAGTCTTAGCTCTCTAAAGGACAAAGATGGTGCAACTCCTCTCAAAACTCTTGCTACTAAGACATCAGCCTTCAAGAGTGGTAGTAGGTTATCATGGTGGAAGCTAATTTTGTACTACTGTTATCCTATTCGTAAACTTGACGCAGAAACTACAATGAAGGAGTTATCTAAAGAATATGCAAATAATGAGAAGGAAGATTATTGTGAAGTAACTTTATACATTGGTGACGAATTAGAAAAGACATACACAAAACGACGTTCTCTTGCTCAATCTTGTCACCACATTCTAAAGTTAGTATTGAGATGGCCAATCATGTCACTATTGGGCTTAGAGGAAATAAAGGCTATTAAGGAGAAGCACATATATGGTGGTCAGCTTCTTAAAGAATTTATGAAGGAGCCTTATGGGTCATACATGGGTGGTGGAGAGACTCCATATGCTGACAAAAACTATGATTGCGAAATCAACGATGATTCAAAATATTTTCAAGAGTACATCAAGGTCGCACGGGGAGTAGGTGATGCCTCAATGGATAATACAAAAGAAGATTCACCAAATATGGATGTAAAAGATACAACATTTTTGGCAGCGGCGAAAAGTGGCATAAAAGAAATTATGGAAGAGCTTAATGCTAAAGTATCGATTACATCCGATCAAAAGGGTTTGTTACTTATAGCAATGAAGAATATTAAAACAGAATTATCAGAAAAGGAAAATGTTTTAAAGGACACAGCATATTTGATTGCAGCAAGTTTTGGAATAATTGAGATGATGAGAGCACTTAAATCAAATATAAGAAGCGTGATCCTTGAGACTAACAGTAACAATGAAAATGCATTGCTTTTGGGAGTAAAGAATAGGCAACCACTTGTTATTCAATTCTTGCTTAATAGTTTATCTAAAGGAGACTTTGGTATCCTAAATTTACAAATTGATAAAAATGAGAATACCATGTTACACTTGGCAGCATACACCTCATTCCAGAGCAAAAATACTTGGAGGTTATCTGGTGCTGCCATGCAATTGACTTGGGACATCAAGTGGTACCAGTACATAAAAGAACTAGTACCAGAGCATTTCAGTAATAAAGACAACAAAGAAAGAAAAACCCCAAGTGAAATATTTAAGGAGGAACACAAAGAACTTCTACAAAAAAGTGTTGATTGGTTGAAAGACACAACACAGTCATACTCAGTAGTAGCAGCTCTTATTGCGGGTGTTGCCTTTGCGACATCAAGCAATATACCTGGTGGCAATAAGCCAACAGGAGAACCAACATTAAAAGGACAACCTGCATTTGAAGGATTTGCTATATCCTCATTAATTGGACTTTACTTCTCTGTCACTGCACTCATAATTTTCCTTTCTATACTCACTTCTCCAAAAGAACTCGAAGAGTTTCGTCTAAACTTGCCAATGAAGCTTCTTTTTGGCTTGATTTCTCTCTTCGTATCCGTTGTTGCTATGCTTGTTTCTTTCTGTGCTGGACATTTCTTTGTGCTCACAGATGAATATACAAAGGGAAGTATCTTGTTCTATTTATATATTTCCATTTTCTTGCCCGTCACATACTATGCAGCTATTCAGTTTCAGTTATTCGTTGATCTTGTTAATGTTATTTGGAAGAAGGTCCCACCACCAAGTGTTAAGGGTGTTCTTCTCTAG 2226 0.3616 MAYNFSTLSEAQFSNSEEAMRFSQLVMDENWPDVIEKFEEDSYFHKIEIKGRGTALHVAVSSGLKEVVKCLVKEIIKHLDETSLRMINERGATPLHLAANAGYKDMCELIIGRDGERKYLIQVENENGETPLFWAVQERQTIVFLYLRQFYPTDFSIAINRNNTSILHVAIQREMFDLAIIIIYNYESLSSLKDKDGATPLKTLATKTSAFKSGSRLSWWKLILYYCYPIRKLDAETTMKELSKEYANNEKEDYCEVTLYIGDELEKTYTKRRSLAQSCHHILKLVLRWPIMSLLGLEEIKAIKEKHIYGGQLLKEFMKEPYGSYMGGGETPYADKNYDCEINDDSKYFQEYIKVARGVGDASMDNTKEDSPNMDVKDTTFLAAAKSGIKEIMEELNAKVSITSDQKGLLLIAMKNIKTELSEKENVLKDTAYLIAASFGIIEMMRALKSNIRSVILETNSNNENALLLGVKNRQPLVIQFLLNSLSKGDFGILNLQIDKNENTMLHLAAYTSFQSKNTWRLSGAAMQLTWDIKWYQYIKELVPEHFSNKDNKERKTPSEIFKEEHKELLQKSVDWLKDTTQSYSVVAALIAGVAFATSSNIPGGNKPTGEPTLKGQPAFEGFAISSLIGLYFSVTALIIFLSILTSPKELEEFRLNLPMKLLFGLISLFVSVVAMLVSFCAGHFFVLTDEYTKGSILFYLYISIFLPVTYYAAIQFQLFVDLVNVIWKKVPPPSVKGVLL 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00897 741 ProSiteProfiles Ankyrin repeat region circular profile. 90 111 - -
Vifa2g00897 741 SUPERFAMILY Ankyrin repeat 27 205 IPR036770 -
Vifa2g00897 741 Gene3D - 29 277 IPR036770 -
Vifa2g00897 741 Coils Coil 232 252 - -
Vifa2g00897 741 ProSiteProfiles Ankyrin repeat profile. 90 111 IPR002110 GO:0005515
Vifa2g00897 741 Gene3D - 359 582 IPR036770 -
Vifa2g00897 741 PANTHER CASKIN 50 724 - -
Vifa2g00897 741 SMART ANK_2a 51 81 IPR002110 GO:0005515
Vifa2g00897 741 SMART ANK_2a 127 157 IPR002110 GO:0005515
Vifa2g00897 741 SMART ANK_2a 462 493 IPR002110 GO:0005515
Vifa2g00897 741 SMART ANK_2a 90 119 IPR002110 GO:0005515
Vifa2g00897 741 SMART ANK_2a 162 191 IPR002110 GO:0005515
Vifa2g00897 741 Pfam Ankyrin repeats (3 copies) 56 143 IPR002110 GO:0005515
Vifa2g00897 741 Pfam Domain of unknown function 575 687 IPR026961 -
Vifa2g00897 741 SUPERFAMILY Ankyrin repeat 379 513 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00897 Vifa-Chr2 234403252 234407094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00897 379 688 Miscellaneous Gene Families AT3G12360 24.857 4.07e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00897 - - mtr:112420313 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00897 2 234403252 234407094 Vifa2g00897 2 234403252 234407094 ECH