Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00722 ATGGCGGTGTATTATAAATTTAAGAGTGCAAAAGATTACGATTCAATTTCCATGGATGGTCCTTTCATCTCTGTTGGCACATTGAAACAAAATATTTTTGTATCCAAGCATTTAGGGAGGGGTACTGATTTCGACCTACTGGTCACCAACGCCCAGACCAATGAAGAATACCTTGATGAAGAAATGTTGATTCCTAAAAATACTTCAGTGTTAATTAGACGTGTTCCAGGACGGACAGGATTACCAATTGTTACTGAACTGCAACAAGAGGTGGGAAATAAAGTGGTGAAAACTGAACCTGAGAACATTAGCTTACCGGCAGATGATACATCTGCCATGAAATATCCTGAAAATTTGGATTGGGATGAATTTGGCAATGATTTATATTCGATTCCTGATCAACTGCCTGTTCAATCGAGCAACATCATTCTAGAGGCTCCTCCAACTAACAATGCTGACGAAGACAGTAAGATTAAGGCCTTGATTGATACTCCGGCATTGGATTGGCAACATCAAGGTTCAGACTTTGGCCCTGGTAGAAGTTTTCAAAGGGGCATGGGTGGACGAATGGGAGGTGGACGTGGTTTTGGGTTGGAGCGGAAAACTCCTCCAGAAGGATATGTATGTCATAGGTGCAAGGTGCCCGGACATTTCATTCAGCATTGCCCTACAAATGGTGATTCAACTTTTGACATAAAAAAAGTCAGGCAACCTACTGGTATTCCTAGATCTATGCTGATGGTAAATCCACAAGGTTCCTATGCTTTACAAAATGGTTCAGTAGCTGTTTTGAAGCCAAATGAGGCTGCTTTTGATAAAGAAATGGAAGGGTTGTCATCTACACGATCAGTTGGTGATCTACCACCTGAGCTCCACTGCCCCTTGTGCAATAATGTCATGAAAAATGCTGTATTGACAAGCAAGTGTTGTTTTAAAAGCTTCTGTGACAAATGTATTAGGGACTATATTATGTCCAAGTCTGCATGCGTATGTCATGCAACAAATGTTCTTGCAGATGATCTTTTACCAAATAAGACGCTTAGAGATGCCATCAATCGCATATTGGAGTCCGGCAATAGCAGTACTGAAAATGCTGGGAGCACTTACCAAGTTCAAGATACGGAGTCTTCTCGTTGTCAACAGCCCATGATACCTTCTCCTACTTCATCTGCTACCCCCAAGGGAGAACCAAAGGCTCTACCAGTTAATGAAGGAATAACAAATATACAGGAAATAGCTGATGACAACAAGCCCGTCTCTGCTACACAACAGGTATCAGAGCAAGTGAAGATTCCTAGAGCGGCTGATGCATCTGAAGCTACTCATGAGTCTATGAGTGTGAAGGAACTAGCCTCACAAGGGAGTGCTAAACTGGTTGAGGAAGAAGTACAGCAAAAGTTGGTTCCTACTGATGCGGGAAAGAAAAAGAAAAAGAAGAAAGTCCGTATGCCCGCAAATGATATACAATGGAAAACCCCTCACGACTTTGGTGGAGAGAACTATATAATGCCAATGGGCCCACCACCTCCTAGTTATAATCCATACTGGAATGGCATGCAACCTTGCATGGACGGATTTATGGCACCATATGCTGCTCCAATGCAGATGATGGGTTATGGCCCAGGCCCATTTGACATGCCATTTGCAGGGGGTCTGTCTCAAGACCCATTTGGTATGCAAGGAGGATACATGATGCCTGTCGCTCCACCTCATAGGGATTTTGCTGAGTTTGGTATGGGGATGAATGTTCCACCACCTGTTATGAATAGAGAGGAGTTTGATGCTCGGAATGCTAATCTGAGGAGGAAGCATGAAAATGAGAGATGTGGTGAAAGGGACTTCTCCAAGGATAGGGAATTTGGTAGGGAGGTGAGCAGTGTCGGGGATGTTTCTTCGATGAAATCAAAAACAAAACCAAATCCAGCGTCATCAGGTGGTGCATATCCTATTTCCCATCAACGTCAGCAACCGTCAGATCAGAAATATAGATCACCTGGACAGTATTCCGACCGCAACCACGAGGATGAGCAACCACGTCCTCACAAATCAAAATCAGAGCACTATTCCGGCCGCAACCATGAGGATGAGCGGCACAGCCACCACAGACCAGAAACCACATACAACGATCGCAAGCAGAAGAGCAACATTTTTTCTCGCATAAGCTTCTCAGCCGAGGAGGAAGCCATTGCCAAAAAGAGAAAGACAACGGAATCAGCTACTGCCTCAATGGCACACGTGTCAAACGGCTTCTATGAAGTGAGAAAAAATGACGATGATTATAGCGACGACGATGATCGGCATTTCAAACGGAGACGATCGAGGTACGAGTTAGTAGATTCAAGAGAGCGGAAGCATAGGTGA 2361 0.4409 MAVYYKFKSAKDYDSISMDGPFISVGTLKQNIFVSKHLGRGTDFDLLVTNAQTNEEYLDEEMLIPKNTSVLIRRVPGRTGLPIVTELQQEVGNKVVKTEPENISLPADDTSAMKYPENLDWDEFGNDLYSIPDQLPVQSSNIILEAPPTNNADEDSKIKALIDTPALDWQHQGSDFGPGRSFQRGMGGRMGGGRGFGLERKTPPEGYVCHRCKVPGHFIQHCPTNGDSTFDIKKVRQPTGIPRSMLMVNPQGSYALQNGSVAVLKPNEAAFDKEMEGLSSTRSVGDLPPELHCPLCNNVMKNAVLTSKCCFKSFCDKCIRDYIMSKSACVCHATNVLADDLLPNKTLRDAINRILESGNSSTENAGSTYQVQDTESSRCQQPMIPSPTSSATPKGEPKALPVNEGITNIQEIADDNKPVSATQQVSEQVKIPRAADASEATHESMSVKELASQGSAKLVEEEVQQKLVPTDAGKKKKKKKVRMPANDIQWKTPHDFGGENYIMPMGPPPPSYNPYWNGMQPCMDGFMAPYAAPMQMMGYGPGPFDMPFAGGLSQDPFGMQGGYMMPVAPPHRDFAEFGMGMNVPPPVMNREEFDARNANLRRKHENERCGERDFSKDREFGREVSSVGDVSSMKSKTKPNPASSGGAYPISHQRQQPSDQKYRSPGQYSDRNHEDEQPRPHKSKSEHYSGRNHEDERHSHHRPETTYNDRKQKSNIFSRISFSAEEEAIAKKRKTTESATASMAHVSNGFYEVRKNDDDYSDDDDRHFKRRRSRYELVDSRERKHR 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00722 786 CDD vRING-HC-C4C4_RBBP6 288 341 - -
Vifa2g00722 786 Gene3D - 1 79 - -
Vifa2g00722 786 MobiDBLite consensus disorder prediction 751 786 - -
Vifa2g00722 786 Gene3D - 201 250 - -
Vifa2g00722 786 MobiDBLite consensus disorder prediction 358 398 - -
Vifa2g00722 786 ProSiteProfiles DWNN domain profile. 3 76 IPR014891 GO:0008270
Vifa2g00722 786 MobiDBLite consensus disorder prediction 358 393 - -
Vifa2g00722 786 MobiDBLite consensus disorder prediction 628 665 - -
Vifa2g00722 786 MobiDBLite consensus disorder prediction 666 709 - -
Vifa2g00722 786 SUPERFAMILY RING/U-box 281 356 - -
Vifa2g00722 786 SUPERFAMILY Retrovirus zinc finger-like domains 192 227 IPR036875 GO:0003676|GO:0008270
Vifa2g00722 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 372 IPR013083 -
Vifa2g00722 786 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 5 779 IPR033489 GO:0006397|GO:0016567|GO:0061630
Vifa2g00722 786 Pfam Zinc knuckle 204 224 IPR025829 -
Vifa2g00722 786 MobiDBLite consensus disorder prediction 602 786 - -
Vifa2g00722 786 Pfam DWNN domain 3 76 IPR014891 GO:0008270
Vifa2g00722 786 SMART DWNN_2 3 76 IPR014891 GO:0008270
Vifa2g00722 786 MobiDBLite consensus disorder prediction 602 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00722 Vifa-Chr2 176880207 176886330 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00722 - K10624 gmx:100808703 1118.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00722 2 176880207 176886330 Vifa2g00722 2 176880207 176886330 ECH