LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g00567	ATGTTTGGTTCAAAGAAAGATGCTAAACCTAGTTCTAAGAATAACAATCCTTCAAGGAAAGCTTCTTCTGAGTATAACCTAGTTCAGGGAGAAACTAATACGAATCCGTTTGATGACGGTGATGTTCATCATGGACGATCTTCTTTGTCTTCGTATGCTCCATCATATGGAAATCGGAACATGTATAAGAACGATTTCCGTGAATCTGGGGGGTTGGAGAGTCAGTCAGTGGAGGATTTGGAGAACTATGCTGTTTACAAGGCTGAAGAGACTACGAAATCGGTGGACAATTGTCGGAAGATAGCTGAGGAGATGCGAGAGGAGGCTTCCAAGACGTTGGTTATGTTGCATCATCAAGGCGAGCAGATTACAAGAAGTCATGATATTGCTGCTGGCATTGACCACGATTTAAGTCGGGGAGAAAAGCTTTTGGGAAGCCTTGGTGGCATGTTCTCGAGAACATGGAAACCGAAGAAGACCGGCGCAATAAAAGGGCCAACCATATTTTCCGATGATCCCGTCCGAAGAAGCGCCAACCACTCTGAGCAACGAGAGAAGTTAGGATTGAACTCTGCCCCTAAAGGACAGTCAAACCCAAGGAGAGCCATTTCGGAGCCAACTAATGCATTTGAAAGAGTCGAGGTTGAGAAAGGGAAGCAAGATGATGCACTATCAGATATAAGTGATCTGTTGGGAGAACTTAAAGGCATGGCCATTGACATGGGATCTGAAATTGACAAGCAAACCAAAGCCATAGGTGGATTTGAAAAAGATACCGAGAAGTTGAATGACCGCATGAATGGCGCCAATCGACGCACTCGCCATTTACTTGGAAAATAG	840	0.4464	MFGSKKDAKPSSKNNNPSRKASSEYNLVQGETNTNPFDDGDVHHGRSSLSSYAPSYGNRNMYKNDFRESGGLESQSVEDLENYAVYKAEETTKSVDNCRKIAEEMREEASKTLVMLHHQGEQITRSHDIAAGIDHDLSRGEKLLGSLGGMFSRTWKPKKTGAIKGPTIFSDDPVRRSANHSEQREKLGLNSAPKGQSNPRRAISEPTNAFERVEVEKGKQDDALSDISDLLGELKGMAIDMGSEIDKQTKAIGGFEKDTEKLNDRMNGANRRTRHLLGK	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g00567	279	CDD	SNARE_Qc	219	272	-	-
	Vifa2g00567	279	MobiDBLite	consensus disorder prediction	8	36	-	-
	Vifa2g00567	279	MobiDBLite	consensus disorder prediction	184	204	-	-
	Vifa2g00567	279	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	214	276	IPR000727	-
	Vifa2g00567	279	MobiDBLite	consensus disorder prediction	256	271	-	-
	Vifa2g00567	279	SUPERFAMILY	SNARE fusion complex	213	277	-	-
	Vifa2g00567	279	Coils	Coil	88	108	-	-
	Vifa2g00567	279	MobiDBLite	consensus disorder prediction	256	279	-	-
	Vifa2g00567	279	SUPERFAMILY	SNARE fusion complex	75	145	-	-
	Vifa2g00567	279	MobiDBLite	consensus disorder prediction	1	73	-	-
	Vifa2g00567	279	SMART	tSNARE_6	80	147	IPR000727	-
	Vifa2g00567	279	SMART	tSNARE_6	209	276	IPR000727	-
	Vifa2g00567	279	Gene3D	-	199	279	-	-
	Vifa2g00567	279	PANTHER	SYNAPTOSOMAL ASSOCIATED PROTEIN	8	279	-	-
	Vifa2g00567	279	FunFam	SNAP25 homologous protein SNAP33	71	148	-	-
	Vifa2g00567	279	MobiDBLite	consensus disorder prediction	162	209	-	-
	Vifa2g00567	279	Gene3D	-	71	149	-	-
	Vifa2g00567	279	CDD	SNARE_SNAP25N_23N_29N_SEC9N	82	146	IPR044766	GO:0005484\|GO:0031201

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g00567	Vifa-Chr2	116994419	116996468	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g00567	K18211		-	gmx:100806698	383.259

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g00567	2	116994419	116996468	Vifa2g00567	2	116994419	116996468	ECH