Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g10717 | ATGGGAGAATCTCCCGAGAAGATGAAAAACGAAGCCGTAAAGATAATCGAAACATTCCAAGTTCTACCAAAACTAGTTGTTTTCGATCTCGATTACACTCTCTGGCCATTCTACTGCGAATGTCGATCCAAACGCGAATCCCCTTCTCTCTATCCCCACGCCATGGGAATCTTGTTAGCTCTCAAACACAAAGGAATCGACATTGCCGTCGCTTCTCGATCGCCAACCGCAGATATTGCGAAGGCTTTCCTCAACAAATTGGGAATCACATCATTCTTTCTTGCTCAGGAAATATATTCTAGTTGGAGTCATAAAACGGATCATTTTCAGAGGATTCATTCAACTACTGGAATTTCGTTTCAGGATATGCTCTTTTTTGATGATGAGAATAGGAACATCCAAGCGGTCTCTAAAATGGGAGTAACTAGCATTTTGGTTGATAATGGAGTAAATCTTGGAGCTTTGTCTCAAGGTCTTGCACAGTTTTCACGAAACTGGAATACATCACAGAAGAACAAGCAGAAATGGCTTTCCAACTATTCTAAAAAGCCAGATTCTTCCAACCCCGCCCCATCAAATTCAACATCCAAGTAA | 594 | 0.4141 | MGESPEKMKNEAVKIIETFQVLPKLVVFDLDYTLWPFYCECRSKRESPSLYPHAMGILLALKHKGIDIAVASRSPTADIAKAFLNKLGITSFFLAQEIYSSWSHKTDHFQRIHSTTGISFQDMLFFDDENRNIQAVSKMGVTSILVDNGVNLGALSQGLAQFSRNWNTSQKNKQKWLSNYSKKPDSSNPAPSNSTSK | 197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g10717 | 197 | FunFam | Magnesium-dependent phosphatase 1 | 8 | 168 | - | - | |
| Vifa1g10717 | 197 | PANTHER | MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 | 1 | 172 | IPR010036 | GO:0016791 | |
| Vifa1g10717 | 197 | MobiDBLite | consensus disorder prediction | 173 | 197 | - | - | |
| Vifa1g10717 | 197 | CDD | HAD_MDP-1_like | 23 | 146 | IPR035679 | - | |
| Vifa1g10717 | 197 | SUPERFAMILY | HAD-like | 23 | 154 | IPR036412 | - | |
| Vifa1g10717 | 197 | Gene3D | - | 3 | 168 | IPR023214 | - | |
| Vifa1g10717 | 197 | SFLD | Haloacid Dehalogenase | 5 | 170 | - | - | |
| Vifa1g10717 | 197 | SFLD | C1.5.2: MDP Like | 5 | 170 | - | - | |
| Vifa1g10717 | 197 | Pfam | Acid Phosphatase | 22 | 164 | IPR010036 | GO:0016791 | |
| Vifa1g10717 | 197 | NCBIfam | HAD-IIIC family phosphatase | 24 | 139 | IPR010033 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa1g10717 | Vifa-Chr1 | 1801273105 | 1801274633 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g10717 | K17619 | - | gmx:100305763 | 316.235 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa1g10717 | 1 | 1801273105 | 1801274633 | Vifa1g10717 | 1 | 1801273105 | 1801274633 | ECH | |
| Vifa1g10717 | 1 | 1801273105 | 1801274633 | Vifa1g10717 | 1 | 1801273105 | 1801274633 | PCT |