Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10678 ATGGCTAGCATCTTTACTGATGATGACTTAGATGATATTCTTATTTGGGAACCTTCAGTATCAGTACCGGACGGCTCCCTTCACGTAACTGCCCGCAACTGTAACGAAACTCGAATCGCTTTAGTTCGATACGAACCTGAAACTGTTCAAGCTCCGCATTTGACTGGCTTTGGGTTTAGATTGTTAGTGAGGTTAATTGAAGCTCCATTGATAGGTCCTCTCCTGATGAATTATTTGAAGAAGGAGAATAAAATTGATGAGTTATTGCGGAACACTGTGATACCCGAGGAACCCATGTTTAAACCTGAATATCCGCCTCAAGAAAAGGAACCTGGTGTTGTTGAGCTTGACGAAGATGGGAGACCTGAAGACCGAGTTGAGTCTGCCTTGAACTGTCTTCCACATTATGATCCTGCTGAGTTATGGGAAAGTTCACCTGCAGACTTTCGGTACTGGAAAATACGTGATTATGCTCATGCTTATCGGTCTAGAAAAGTAACCCCATCTATGATTGCTGAGCGCATCATCTCAATTATAGAGGAGAATGGAATTGATAAACCTCCGACACCACTATTGATAACTTTTGATGCTGCAGAAGTCCGGAAGCAGGCAGCAGCATCTACTCAGAGGTTTGAAGCAGGAAATCAATTATCAATATTGGATGGAATTTTCATAGCTATTAAAGATGACATAGACTGCCTTCCTCATTCGTCTAAGGGTGGATCTACATGGTTGCATGAGGTACGTGCTGTAAAGAAGGACAATGTCTCTGTTTCAAGACTGCGTAGCTGTGGTGTCATATTCATAGGGAAGGCAAATATGCATGAGCTTGGCATGGGTACGACAGGAAATAATCCTAATTACGGAACTGCAAGAAATCCTCATGCACCTGATAGGTACACTGGGGGATCTTCTTCAGGTCCAGCTGCAATTGTTGCTTCTGGACTATGTTCTGCTGCACTTGGAACTGATGGTGGAGGTTCGGTCCGTATTCCTTCTTCCCTATGTGGCGTGGTAGGATTGAAGATAAATTATGGGAGATCAAGCATGGAAGGGTCCTTGTGTGATTCTGGGACAGTAGAAGTTATTGGACCCATTGCTTCTTCCGTAGAGGATGCAATGCTAGTGTATGCAGCAATGTTGGGCTCATCACCTGCCACTAGAATCAGTATGAAGCCGTCAACACCTTGTTTACCAACTCTGTCGTTCGATGATGATACAAATGCTTTGGGATCATTAAGAATAGGGAAGTACACCCCGTGGTTCAATAATGTCCATTCAACTGAAGTCTCTGATAAATGTGAGGATGCTCTTAATCTTCTGTCAAAAGTGCATGGTTGTGAAGTGATAGAAGTTGTTATCCCAGAGATTTTGGAGATGCGAACTGCCCATGTTGTTTCGATTGGCTCTGAATGCTTATGTTCATTGAATCCCGATTGTGAAGAGGGGAAAGACGTAAAATTGACATATGATACCCGCACAAGTTTGGCACTTTTTCGGTCGTTTACAGCTGCAGATTATATTGCAGCGCAATGTATTAGGAGAAGGAATATGCATTACTTCATGGAGATTTTCAAGAAAGTTGATGTCATAGTGACTCCAACAACTGGCATGACGGCGCCCATCATACCTCCAAGTGCCCTTAAAAACGGTGAAACAGATATGCAGACAACAGGTTACCTTATGAGGTTCGTTGTTCCAGCAAATCTTTTGGGATTCCCTGCCATTTCTGTCCCGGTGGGTTACGATAAAAAAGGACTTCCAATAGGTTTGCAAATAATTGGCCGACCATGGGCAGAAGCTACTATTTTGCGTGTAGCATTTGCAGTTGAGAAACTCAGCGGTGAGTCAAAGAAACGGCCAGTGTCATTCTATGAAGTTCTGAGGGCTAACTGA 1896 0.4341 MASIFTDDDLDDILIWEPSVSVPDGSLHVTARNCNETRIALVRYEPETVQAPHLTGFGFRLLVRLIEAPLIGPLLMNYLKKENKIDELLRNTVIPEEPMFKPEYPPQEKEPGVVELDEDGRPEDRVESALNCLPHYDPAELWESSPADFRYWKIRDYAHAYRSRKVTPSMIAERIISIIEENGIDKPPTPLLITFDAAEVRKQAAASTQRFEAGNQLSILDGIFIAIKDDIDCLPHSSKGGSTWLHEVRAVKKDNVSVSRLRSCGVIFIGKANMHELGMGTTGNNPNYGTARNPHAPDRYTGGSSSGPAAIVASGLCSAALGTDGGGSVRIPSSLCGVVGLKINYGRSSMEGSLCDSGTVEVIGPIASSVEDAMLVYAAMLGSSPATRISMKPSTPCLPTLSFDDDTNALGSLRIGKYTPWFNNVHSTEVSDKCEDALNLLSKVHGCEVIEVVIPEILEMRTAHVVSIGSECLCSLNPDCEEGKDVKLTYDTRTSLALFRSFTAADYIAAQCIRRRNMHYFMEIFKKVDVIVTPTTGMTAPIIPPSALKNGETDMQTTGYLMRFVVPANLLGFPAISVPVGYDKKGLPIGLQIIGRPWAEATILRVAFAVEKLSGESKKRPVSFYEVLRAN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10678 631 PANTHER TRANSAMIDASE 145 626 IPR000120 GO:0003824
Vifa1g10678 631 Pfam Amidase 192 604 IPR023631 -
Vifa1g10678 631 ProSitePatterns Amidases signature. 302 333 IPR020556 -
Vifa1g10678 631 SUPERFAMILY Amidase signature (AS) enzymes 130 613 IPR036928 -
Vifa1g10678 631 Gene3D Amidase signature (AS) domain 154 615 IPR036928 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10678 Vifa-Chr1 1794093333 1794111254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10678 25 631 Acyl Lipid Metabolism Gene Families AT5G64440 67.270 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10678 - - gmx:100778732 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10678 1 1794093333 1794111254 Vifa1g10678 1 1794093333 1794111254 ECH