Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10663 ATGACGGTGGAATATCAGTGTTGTGAAACAGAGTTTTTCATAAGGATAGTGATAATTGTGTTGCTTGTTGTGTTTGCTGGATTGATGTCTGGGCTTACTTTAGGTCTCATGTCTTTGAGCCTTGTTGATCTTGAGGTTCTTGCTAAATCTGGTACTCCTCAGGATCGAAAACATGCTGATAAAATATTGCCTGTTGTAAAAAATCAACATCTATTGCTTTGCACTCTTTTGATTTGCAATGCTGCTGCCATGGAGGCACTTCCGATATTTCTTGATAGTCTTGTTGTTGCTTGGGGAGCTATCTTAATTTCTGTGACACTAATTCTTCTCTTTGGTGAGATTATTCCTCAATCAGTTTGTTCTCGATATGGTTTAACGATCGGTGCAACAGTGGCTCCGGTTGTTCGTGTTCTTGTATGGATATGTTTTCCTGTTGCTTATCCAATTAGCAAGTTGTTGGATTTTTTGCTTGGTCATCGCCATGAAGCTCTTTTCCGCAGAGCTGAGCTGAAAACACTAGTAAATTTACATGGTAACGAGGCTGGAAAAGGTGGTGAACTAACACATGATGAAACAACTATCATTGCTGGAGCACTTGAACTCTCTGAGAAAACTGCTGGTGATGCTATGAGTCCTATAAATGAAATATTTTCTATTGATATTAATTCAAAACTTGATAGAGATTTGATGAGTGTTATATTGGAGAAAGGACATAGCAGAGTCCCTGTTTATTATGAAGAGCCTACGAATATCATTGGACTTATTCTGATCAAGAATTTATTAACTATTGATCCAGAAGAGGAACTACCTGTGAAAAGTGTGACCATACGTAAAATACCAAGGGTTCCAGAAATGATGCCACTGTATGATATATTGAATGAATTCCAAAAGGGACATAGCCACATGGCTGTTGTTGTGAGAAATTTTGACAAGATAGGGCAACAATCTTCCAACAATAATTGCAATGATTCAGTGAGAGATGTGAAGATCAATATTGATGTGGAAAAGACTCCTCAAGAAAAAATGTTGAAAAACAAAATGCAACTTCATAAGAGGAAAAGCTTACCAAGTGCGAGTAATTCAAATAGGAGCACTGGTTCTTCTAGGAGCAAAAAATGGTCACAAAATATTTACTCAGATATTTTGGAAATTGATGGAAATTCAATTCCAAAGCTACCTGAAAAAGAAGAAGCTGTTGGAATTATTACAATGGAAGATGTAATTGAAGAGCTTTTGCAGGAGGAGATCTTTGATGAGACAGATCATTTTGAAGACTCATAA 1281 0.3692 MTVEYQCCETEFFIRIVIIVLLVVFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHADKILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVVAWGAILISVTLILLFGEIIPQSVCSRYGLTIGATVAPVVRVLVWICFPVAYPISKLLDFLLGHRHEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTAGDAMSPINEIFSIDINSKLDRDLMSVILEKGHSRVPVYYEEPTNIIGLILIKNLLTIDPEEELPVKSVTIRKIPRVPEMMPLYDILNEFQKGHSHMAVVVRNFDKIGQQSSNNNCNDSVRDVKINIDVEKTPQEKMLKNKMQLHKRKSLPSASNSNRSTGSSRSKKWSQNIYSDILEIDGNSIPKLPEKEEAVGIITMEDVIEELLQEEIFDETDHFEDS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10663 426 FunFam DUF21 domain-containing protein 189 324 - -
Vifa1g10663 426 MobiDBLite consensus disorder prediction 352 372 - -
Vifa1g10663 426 SUPERFAMILY CBS-domain pair 194 413 IPR046342 -
Vifa1g10663 426 Gene3D - 372 419 IPR046342 -
Vifa1g10663 426 Gene3D - 189 328 IPR046342 -
Vifa1g10663 426 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
Vifa1g10663 426 PANTHER METAL TRANSPORTER CNNM 3 425 IPR045095 GO:0010960
Vifa1g10663 426 MobiDBLite consensus disorder prediction 345 372 - -
Vifa1g10663 426 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Vifa1g10663 426 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Vifa1g10663 426 Pfam Cyclin M transmembrane N-terminal domain 18 190 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10663 Vifa-Chr1 1792338202 1792340723 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10663 K16302 - gmx:100795897 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10663 1 1792338202 1792340723 Vifa1g10663 1 1792338202 1792340723 ECH
Vifa1g10663 1 1792338202 1792340723 Vifa1g10663 1 1792338202 1792340723 PCT