Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10661 ATGAGGTCTTCATTTCATATAATCTTAACCATCTTCTTCATTTCCTCAACCCTTTTCTGCATAAATATTTCCCTAGCACAAAACACCCCTCAAGACTTCCTTGAAGTACACAATCAAGCTCGAGAAGAGGTTGGTGTTGGTCCACTTCATTGGAACCATACACTTGAAGCCTATGCACAAGACTATGCAAACAAGAGAATCAATGATTGTGAACTTGAGCACTCTATGGGACCTTTTGGTGAGAATCTTGCTGAGGGTTATGGTGAAATGAATGGTTCTGATGCTGTGAAGTTTTGGATAACTGAAAAGCCTGATTATGACTACCACTCAAACTCTTGTGTTCATGATGAGTGTTTGCATTATACTCAAATTGTTTGGCGTGATTCTGTTTATCTTGGTTGTGGTAAGTCCAAATGTAAGAATGGTTGGGTTTTTGTGATTTGTAGCTATTCACCACCTGGCAATGTTGATGGACAACGACCTTATTGA 489 0.3926 MRSSFHIILTIFFISSTLFCINISLAQNTPQDFLEVHNQAREEVGVGPLHWNHTLEAYAQDYANKRINDCELEHSMGPFGENLAEGYGEMNGSDAVKFWITEKPDYDYHSNSCVHDECLHYTQIVWRDSVYLGCGKSKCKNGWVFVICSYSPPGNVDGQRPY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10661 162 SUPERFAMILY PR-1-like 27 162 IPR035940 -
Vifa1g10661 162 CDD CAP_PR-1 30 162 - -
Vifa1g10661 162 PRINTS Allergen V5/Tpx-1 family signature 95 108 IPR001283 -
Vifa1g10661 162 PRINTS Allergen V5/Tpx-1 family signature 49 67 IPR001283 -
Vifa1g10661 162 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Vifa1g10661 162 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
Vifa1g10661 162 Pfam Cysteine-rich secretory protein family 34 150 IPR014044 -
Vifa1g10661 162 SMART SCP_3 28 158 IPR014044 -
Vifa1g10661 162 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Vifa1g10661 162 FunFam Putative pathogenesis-related protein 1 27 162 - -
Vifa1g10661 162 Gene3D CAP 27 162 IPR035940 -
Vifa1g10661 162 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 31 159 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10661 Vifa-Chr1 1791959493 1791959981 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10661 K13449 - gmx:100527778 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10661 1 1791959493 1791959981 Vifa1g10661 1 1791959493 1791959981 ECH