Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10552 ATGTCTTTCTCCAGCCCAAATATCTCACCGCCGTCGCAAAGAACAACATACAACAACCATGTATTCACATTCACCCACGTTGTACAACCACAACCACTTGTACGAGGTTCATGTTCCATCTCAAGGAGCCGCATTTGTTTTCTTTCGAAATTCGACCAAACTTTTTCTTCACCTGTCATGGAGGAAGAGGGTCAGAAAAAACCGAATCTTTTCTCAGAATCAGAATCAGAATCAGAAGAAGATTATTCCAAGGAATTGGATGTTGCTGTTAGAGCAGTGCAAATGGCTTGTTCACTTTGTCAGAGAGTTCAGGACATTTTGATTTCTAAAACCAATCATCAGGTTCAGTCTAAGGATGATAATTCTCCTGTTACTGTTGCTGATTGGAGTGTCCAAGCAGTTGTGAGCTGGATATTATCCGAGTGTCTAGGAAGCGAAAACATCTCAATTGTAGCTGAAGAAGATGTTCATACTCTCTCCAAATCTAATGCATCTGAATTGTTAGAGTCAGTGGTTAACACTGTGAACGAATGCCTAGCTGACGCTCCTCGATTTGGTGTTGAGAAGCCAAAATCATCACTAACGACTTCAGAAGTTCTCGAAATCATTAGTCGGTGTAACTCAACCGGTGGCCCGTCTGGTAGATTTTGGGTACTGGATCCTGTTGATGGCACGCTCGGGTTTGTTCGCGGAGATCAATATGCTGTAGCTCTAGCACTCATAGAAAATGGAGAAGTGGTGCTTGGTGTTCTTGGTTGTCCTAATTATCCAATGAGAAAAGAATGGTTAGGCTATCAACATCGGTATCATAGGATTGTATCGAAGCTAACTCCTCCGAATTCTGAAAGTTGGAACAAAGGTTGTGTTCTATATGCTAAAAAGGGTAGTGGAAAGGCTTGGATGCAACCACTGATCCATGTGAATAAGATGTTTGTATGGCCAAACCATGCGAAACAAGTTTTTGTATCTCCCATTGACAATCCAGCATTGGCCACTTTTTGCGAACCAGTGGAGAAAGCCAATTCAAGCCATTCTTTTACCGAAGGATTGGCTCACAGTGTTGGTCTCAGGAAACAGCCATTGAGAGTATACAGCATGGTGAAATATGCAGCAATAGGGCGCGGAGATGCAGAGGTTTTCATGAAATTTGCAAGGGCAGGTTACAAGGAGAAAATATGGGATCATGCTGCAGGTGTTATCATCATACAAGAAGCTGGTGGTGTGGTAACAGATGCTGGAGGATGTCCCCTAGATTTCTCAAAAGGATTATATTTGGAAGGCTTAGACCGCGGTATAATTGCGTGTTCTGGAGCGTCTTTACATGGAAAGATCATTGATGCTGTTGATGCTAGTTGGGGATGTTCTAGCCTTTGA 1374 0.4279 MSFSSPNISPPSQRTTYNNHVFTFTHVVQPQPLVRGSCSISRSRICFLSKFDQTFSSPVMEEEGQKKPNLFSESESESEEDYSKELDVAVRAVQMACSLCQRVQDILISKTNHQVQSKDDNSPVTVADWSVQAVVSWILSECLGSENISIVAEEDVHTLSKSNASELLESVVNTVNECLADAPRFGVEKPKSSLTTSEVLEIISRCNSTGGPSGRFWVLDPVDGTLGFVRGDQYAVALALIENGEVVLGVLGCPNYPMRKEWLGYQHRYHRIVSKLTPPNSESWNKGCVLYAKKGSGKAWMQPLIHVNKMFVWPNHAKQVFVSPIDNPALATFCEPVEKANSSHSFTEGLAHSVGLRKQPLRVYSMVKYAAIGRGDAEVFMKFARAGYKEKIWDHAAGVIIIQEAGGVVTDAGGCPLDFSKGLYLEGLDRGIIACSGASLHGKIIDAVDASWGCSSL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10552 457 CDD PAP_phosphatase 85 448 - -
Vifa1g10552 457 Gene3D - 321 451 - -
Vifa1g10552 457 FunFam PAP-specific phosphatase HAL2-like 80 310 - -
Vifa1g10552 457 PANTHER PHOSPHATASE 72 454 - -
Vifa1g10552 457 FunFam PAP-specific phosphatase HAL2-like 321 453 - -
Vifa1g10552 457 SUPERFAMILY Carbohydrate phosphatase 81 449 - -
Vifa1g10552 457 ProSitePatterns Inositol monophosphatase family signature 2. 393 407 IPR020550 GO:0046854
Vifa1g10552 457 ProSitePatterns Inositol monophosphatase family signature 1. 217 230 IPR020583 -
Vifa1g10552 457 PRINTS Inositol monophosphatase superfamily signature 217 233 IPR000760 -
Vifa1g10552 457 PRINTS Inositol monophosphatase superfamily signature 390 414 IPR000760 -
Vifa1g10552 457 Pfam Inositol monophosphatase family 120 451 IPR000760 -
Vifa1g10552 457 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 82 453 IPR006239 GO:0006790|GO:0008441
Vifa1g10552 457 Gene3D - 80 311 - -
Vifa1g10552 457 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10552 Vifa-Chr1 1776244555 1776246887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10552 K01082 - gmx:100776247 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10552 1 1776244555 1776246887 Vifa1g10552 1 1776244555 1776246887 ECH
Vifa1g10552 1 1776244555 1776246887 Vifa1g10552 1 1776244555 1776246887 PCT