Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10480 ATGACCTGGAAGCTCCTTCGCAGCATTGCAATAGAGATTAGAACCCGAACCAGATTATACTACACCAGCAGGACCAAGAAACCGAGCCTCTACTCCAAAATCAGCCCCCTCGGAAACCCAACCACAAGCGTCGTTCCCCAGCTCGACGATTGGGTCTTCAATGGGAACAAAATCAGCGTCGGTGAGCTTCAGCGCATCGTTCGTGATCTTCGCAAGCGTAGCAGGTTCATCCAAGCTCTCCAGGTATCTGAGTGGATGAATAAGAATGGTGTGTGCATATTTTCCCCAGTTGAACATGCTGTGCATTTGGATCTTATTGGTAAGGTTCATGGATTTGTTTCTGCAGAAACCTATTTTGATAGCTTGAAGGAACAAGACAGAAATGAGAAGACATATGGTGCTCTTTTGAATTGTTATGCGCGTCAGCGCGATGTTGATAAGTCTCTATCTCATTTGAAGAAAATGAAGGAGTTGGGGTTCGCTTCGTCGCCTCTGACTTACAATAACATTATGTGTTTATACACAAATATCGGACAGCATGAAAGTGTTGCTGGTGTGCTGTCTGAGATGAAGGAAAACCATGTTTTACCGGATAACTTTAGCTATAGGATTTGTATAAATTCTTATGGTGTGAGATCGGATATAGAAGGAATGAAGACGACATTGAAAGAGATGGAGAATCAACCACACATTGTGATGGACTGGAACACTTATTCTGTTGTGGCAAATTTTTATATAAAAGCTGACCTTTCAGGTGAGGCGATTGATGCTCTAAGGAAATGCGAGGCGAGGCTAGAGGACAAAGATGGAGAGGGTTACAACCATCTTATCTCTCTTTACGCACGACTAGGGAAAAAGAATGAGGTTTTAAGACTATGGGAGATGGAGAAAAATGCTTGCAAGAGATGCATAAATAGGGATTTTATAACCATGTTAGAATCTCTGGTAAAACTTGAGGAGTTTGATGAAGCTGAGAAAATACTCAAGGAATGGAAATCCTCTGGTAACTGTTATGATTTGGGAGTTCCTAATGTGGTAATCGTTGGATACTCTGAGAAAGATTTTCCCGAGAGAGCAGAAGCCATACTTGAAGATTTACGGAACAAGGGAAAGGCCACTAACCCAAACTCTTGGACTCTAGTTGCAAGTCGATACTTGCATAAGGGTGAAATGGAGAAAGCATTTGGGTGCTTGAAAATTGCCATCTCTTTGTATTCGGAAAATAAAAAATGGAAGCCTAACCCTAGGGTGATTGCGGATCTACATAGTTGGATTGGTGAGAATGCTTGTGTTGAAGATGCAGAAGCTTTGGTGAGCTTGTTGAAAAACGTCCAAAAGAATATACACATGTATCATGCTTTGATGAAGGCTTATGTACGAGCTGATAAAGAAGTGGATGGGGTCTTAGACCGCATGAAAAAAGATAACATTAAGGAAACTAAAAAAACTATAGAAATTATCAACATGAGGAAGGCGGGAAATTTGTAA 1488 0.4133 MTWKLLRSIAIEIRTRTRLYYTSRTKKPSLYSKISPLGNPTTSVVPQLDDWVFNGNKISVGELQRIVRDLRKRSRFIQALQVSEWMNKNGVCIFSPVEHAVHLDLIGKVHGFVSAETYFDSLKEQDRNEKTYGALLNCYARQRDVDKSLSHLKKMKELGFASSPLTYNNIMCLYTNIGQHESVAGVLSEMKENHVLPDNFSYRICINSYGVRSDIEGMKTTLKEMENQPHIVMDWNTYSVVANFYIKADLSGEAIDALRKCEARLEDKDGEGYNHLISLYARLGKKNEVLRLWEMEKNACKRCINRDFITMLESLVKLEEFDEAEKILKEWKSSGNCYDLGVPNVVIVGYSEKDFPERAEAILEDLRNKGKATNPNSWTLVASRYLHKGEMEKAFGCLKIAISLYSENKKWKPNPRVIADLHSWIGENACVEDAEALVSLLKNVQKNIHMYHALMKAYVRADKEVDGVLDRMKKDNIKETKKTIEIINMRKAGNL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10480 495 PANTHER OS12G0527900 PROTEIN 26 480 - -
Vifa1g10480 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Vifa1g10480 495 Gene3D Tetratricopeptide repeat domain 344 494 IPR011990 GO:0005515
Vifa1g10480 495 Gene3D Tetratricopeptide repeat domain 230 337 IPR011990 GO:0005515
Vifa1g10480 495 SUPERFAMILY TPR-like 117 293 IPR011990 GO:0005515
Vifa1g10480 495 Pfam Pentatricopeptide repeat domain 442 478 IPR002885 -
Vifa1g10480 495 NCBIfam pentatricopeptide repeat 131 160 IPR002885 -
Vifa1g10480 495 NCBIfam pentatricopeptide repeat 166 198 IPR002885 -
Vifa1g10480 495 Gene3D Tetratricopeptide repeat domain 59 229 IPR011990 GO:0005515
Vifa1g10480 495 Pfam PPR repeat 310 335 IPR002885 -
Vifa1g10480 495 Pfam PPR repeat 273 294 IPR002885 -
Vifa1g10480 495 Pfam PPR repeat 131 160 IPR002885 -
Vifa1g10480 495 SUPERFAMILY TPR-like 313 411 IPR011990 GO:0005515
Vifa1g10480 495 Pfam PPR repeat family 166 209 IPR002885 -
Vifa1g10480 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10480 Vifa-Chr1 1757013884 1757015488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10480 29 443 EF-hand Containing Proteins AT1G02150 32.692 1.30e-75 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10480 - - lja:Lj6g3v2043070.1 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10480 1 1757013884 1757015488 Vifa1g10480 1 1757013884 1757015488 ECH