Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10469 ATGGAAGCTCAAATGACTGATTCGGACTGGGAGTCTTCCAGCGAGAGCAGTAGCAGTGATGATCAAGAGGATATTGATTTTCTATATGGGGGCCAAGCTCAGAGCATATTGTCTAGTTTAGAGGAAAGCATCGGGAAGATCGATGATTTTCTCTCATTTGAGAGGACATTTGCTTATGGAGATGTCGTCCGTTCCTTGTCAGACACAACTGGACAGATGGGGAGGGTTGTTGGTGTGGATGTGGCCGTGGATTTGGAAAACGTTCAAGGAAGCATATTAAAAAACGTGAACTCCAAGAAACTTTTGAAGATTCGTTCCATTTCAGAAGGTGATTATGTGATTAAAGGGCCGTGGCTTGGTCAGGTTCAAAGGGTAGTGGACAGATTAACTGTGTTGTTTGACGATGGGACAAAATACGATATCACGACCTTGGAAAAAGATAAGATTTTACCACAAACTCCTAATTTTCTTGAAGATTCGCAGTATCCGTACTATCCAGGGCAGAGAGTGAAAGTTAAGTCCTCAACCGGTTCTAAATCGGCCAGATGGCTATGTGACAATTGGAGAGATAATCATGACGAAGGAACTGTTTGTTCCGTGGAAGCAGCTGCAGACCAAAAGGAACAAATTGAAAAGATGATTCGAGATTCACCGGATGGTTATCTTCCTAATACGTATCTTACTTTGGGTTCAGATCCGCAGAACTTAATCCCTGTGAATGTCATAAACACTCATGAGTTTTGGCCTCATCAGTTTGTGATGGAAAAAGGTACTTCTGAAGATGATGATGATGATGATGATGATAAGGATAGCAATCAAAGATGGGGCGTTGTTCTATCAGTCGATGCAGAAGAGCATACTGTAAACGTACAATGGAGAACAGTTCTGACATCCGAGCCAGATGATTTGGCTGGAGAACCAACGTTGGAAACTGTGAGTGCATACGAACTTGTTGAACACCCGGATTTTTCCTGTTGTTTTGGTGATATTGTGTTCAAGACGGCTCAAAAGCAGGTTGGTTACAGAGCTGAGAAAAATAATGCAAATTCAATGAGTGACTTGAATGTGGAAGTTCCTCTCATAAAACTGAATCAAATCAACTACCACAATAAGTCCAAAGATAACTGTCACCTGTCCTGTATCGGCAATGTTTCTGGATTCAAAGATGGTCACGTCGAGGTGAAATGGGCTACTGGTTTAACAACTAAGGTTGCACCATATGAAATTTTTCGTATTGATAAGCACGAAGGTTCAACTGCAACTCCTGTTTCTTATGAAACAAATGTTGCCGACTTGACTCAAGATAAATGTGATAAGCATCCAGGAGAGAGAAGTTCCTTTTCCCTTCCTCAAGCTGCCTTTGAACTTTTCTCAAACATTAAAGCCGGTGTATTTCAAAAACTTGGCTTGACATCATTTTATGGAGCTGTTTCCACAGTCCCTACATTTGAAGAGGGAAATGCGTCTGATTTTCTCGGCAAGAAAGATTTGGAAACTTGTAGCCTCGACACTAATTCACATCCCGTGAGTTCGTTGCAGTCTGCTGAAGACTCGACTTCGATTCATGAGACGAGGGATGTTCCAGTTTCTTTAAACAACAACTGTTCAGATCAGTTGAAACAGTTCGACGTAATTGATACTTGCTCAGACCACCACTTCTTCAACGAGGGAAAAGGGTTGCCATTATCTCAGGTTAAGAAAGATTGGGTGAAAAAGGTGCAGCAAGAATGGAGCATCCTGGAGAAAAATGTTCCTGAAACTATTTATGTCCGTGTTTTTGAAGAAAGAATGGATCTCATGCGAGCAGTCATTGTTGGTGCGTCAGGGACACCTTATCACGACGGCTTGTTTTTCTTCGATGTATGTTTCCCTCCCGAGTATCCTAGTGAACCACCGATTGTGCACTACATTTCTGGCGGGTTACGAATAAATCCTAATTTGTACGAGTCAGGGAAAGTGTGTTTAAGTCTCCTAAACACGTGGAGTGGTACCGCGGCCGAAGTGTGGAACCCCGGATCTTCCACGGTTCTTCAAGTCCTTCTCTCTCTGCAAGCTCTTGTCCTTAACGAGAAGCCTTATTTCAACGAGGCTGGATACGACCAACAAATCGGCAGAGCCGAAGGAGAGAAAAACTCAGTGAGTTACAACGAGAATGCTTTCCTCCTCACCTCCAAATCCATGCTGTATCTATTAAGAAACCCGCCAAAGCATTTCGAGGCATTGGTGGAAGAACACTTTCGACAACGCGCCAAACATATACTTAATGCTTGTAAGGCATATCTTGAAGGAGCTTCTATTGCAGGTGAAAAAAGTGAGCATGAAAACCAGAAGGGAACTTCTGCAGGATTTAAGATTATGCTTGCTAAACTCTTTCCTAAGCTTGTAGAAGCATTTTCTGGTAAGGGAATTGATTGCTCTCAGTTTGTTGACATGCACAAGTAA 2442 0.4251 MEAQMTDSDWESSSESSSSDDQEDIDFLYGGQAQSILSSLEESIGKIDDFLSFERTFAYGDVVRSLSDTTGQMGRVVGVDVAVDLENVQGSILKNVNSKKLLKIRSISEGDYVIKGPWLGQVQRVVDRLTVLFDDGTKYDITTLEKDKILPQTPNFLEDSQYPYYPGQRVKVKSSTGSKSARWLCDNWRDNHDEGTVCSVEAAADQKEQIEKMIRDSPDGYLPNTYLTLGSDPQNLIPVNVINTHEFWPHQFVMEKGTSEDDDDDDDDKDSNQRWGVVLSVDAEEHTVNVQWRTVLTSEPDDLAGEPTLETVSAYELVEHPDFSCCFGDIVFKTAQKQVGYRAEKNNANSMSDLNVEVPLIKLNQINYHNKSKDNCHLSCIGNVSGFKDGHVEVKWATGLTTKVAPYEIFRIDKHEGSTATPVSYETNVADLTQDKCDKHPGERSSFSLPQAAFELFSNIKAGVFQKLGLTSFYGAVSTVPTFEEGNASDFLGKKDLETCSLDTNSHPVSSLQSAEDSTSIHETRDVPVSLNNNCSDQLKQFDVIDTCSDHHFFNEGKGLPLSQVKKDWVKKVQQEWSILEKNVPETIYVRVFEERMDLMRAVIVGASGTPYHDGLFFFDVCFPPEYPSEPPIVHYISGGLRINPNLYESGKVCLSLLNTWSGTAAEVWNPGSSTVLQVLLSLQALVLNEKPYFNEAGYDQQIGRAEGEKNSVSYNENAFLLTSKSMLYLLRNPPKHFEALVEEHFRQRAKHILNACKAYLEGASIAGEKSEHENQKGTSAGFKIMLAKLFPKLVEAFSGKGIDCSQFVDMHK 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10469 813 SMART ubc_7 571 728 - -
Vifa1g10469 813 Pfam Ubiquitin-conjugating enzyme 573 719 IPR000608 -
Vifa1g10469 813 CDD UBCc 570 723 IPR000608 -
Vifa1g10469 813 Gene3D Ubiquitin Conjugating Enzyme 531 805 IPR016135 -
Vifa1g10469 813 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 5 805 - -
Vifa1g10469 813 FunFam Probable ubiquitin-conjugating enzyme E2 23 530 802 - -
Vifa1g10469 813 SUPERFAMILY UBC-like 563 737 IPR016135 -
Vifa1g10469 813 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 568 728 IPR000608 -
Vifa1g10469 813 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10469 Vifa-Chr1 1755288377 1755291536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10469 228 807 Miscellaneous Gene Families AT2G33770 49.261 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10469 K10581 - gmx:100306246 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10469 1 1755288377 1755291536 Vifa1g10469 1 1755288377 1755291536 ECH