Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10397 ATGGGGGCGTATAGAGCTGATGATGATTACGATTATCTGTTCAAGGTTGTTCTGATTGGTGATTCTGGTGTTGGTAAATCCAACCTTTTGTCTAGATTCACCAAAAATGAATTTAGCCTTGAATCTAAATCTACCATTGGTGTCGAGTTTGCAACCAGAAGCATTAAGGTTGATGATAAGGTCATCAAGGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTATCGAGCAATTACAAGTGCATACTATAGAGGCGCCGTTGGTGCTTTACTAGTCTATGATGTTACACGCCATGTTACATTTGAGAATGTGGAGAGATGGTTGAAGGAGCTGAGAGACCACACAGACACCAACATTGTCGTGATGCTTGTTGGTAACAAAGCTGACTTGCGTCATCTGCGAGCGGTTTCAACTGAAGATTCAACGGCTTTTGCGGAAAGGGAGCACACATTTTTCATGGAAACATCTGCGCTCGAGTCCTTGAACGTTGAAAATGCCTTTACTGAAGTGCTGACACAGATCTATCGTGTTGTGAGCAAGAAAGCCCTTGAGATCGGTGATGATCCAGCAGCGTTACCGAAAGGACGGACAATTGATGTTGGATCTCGGGATGATGTATCAGCTGTGAAGAAATCTGGATGTTGCTCTTCTTGA 654 0.4373 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIKVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDTNIVVMLVGNKADLRHLRAVSTEDSTAFAEREHTFFMETSALESLNVENAFTEVLTQIYRVVSKKALEIGDDPAALPKGRTIDVGSRDDVSAVKKSGCCSS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10397 217 SMART ran_sub_2 19 216 - -
Vifa1g10397 217 SMART ras_sub_4 11 177 - -
Vifa1g10397 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Vifa1g10397 217 ProSiteProfiles small GTPase Ras family profile. 8 217 IPR001806 GO:0003924|GO:0005525
Vifa1g10397 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 180 IPR027417 -
Vifa1g10397 217 NCBIfam small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Vifa1g10397 217 FunFam ras-related protein RABA1f 6 215 - -
Vifa1g10397 217 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Vifa1g10397 217 SMART rab_sub_5 14 177 - -
Vifa1g10397 217 PANTHER DRAB11-RELATED 7 201 - -
Vifa1g10397 217 ProSiteProfiles small GTPase Rho family profile. 7 178 - -
Vifa1g10397 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Vifa1g10397 217 Gene3D - 6 215 IPR027417 -
Vifa1g10397 217 CDD Rab11_like 11 175 - -
Vifa1g10397 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Vifa1g10397 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Vifa1g10397 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Vifa1g10397 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Vifa1g10397 217 PRINTS Transforming protein P21 ras signature 37 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10397 Vifa-Chr1 1736799288 1736800566 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10397 K07904 - gmx:100805995 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10397 1 1736799288 1736800566 Vifa1g10397 1 1736799288 1736800566 ECH