Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10241 ATGGAGGACAAAAATTTCGATTCTAAGAATCACGTGCAAGTTGTAGAAGATTTATCTGATAGGGTTTCACGTTTATCCCCTTGTGATCACATATTCAATTCATATTCTCCTCTGGATGATGAAGTGGATGGTAATTTGAGGAATCATCATAATCATGTTACTAAAGAGAATTCTGACTCTTTGTCTTCTGTTAGCACTGAGGAGAATAATATGAACTTATCTAGATTATATCCTGAATTACCCGAGGAATCGTTGGAAAGGAATGAAGAGGATATGGAGGCTTTAGCTGGTATTCAGAATCAGAGAAAGTATTTTTATTATGATGCTCCGCTGAATGAAGATACTGGAGTTTGGATACCGGTTTCGGTTCCACCTATGTTGGAAGATGATCATAAAGAGTGGACCAAAGGTTTTCACTCGAGTGGAGGTTTTTTTCCTGAGGATGATATGGGATGGAATCAATATGTTGGAGGAGATAAGGAATTGACTATGTGGGAAGTGTTGGTAGAGATTTTACTTGTGGCGAGAGGAAAAGTGTCGTCTTTGGCATCAGGAGATATTCATACGTATAGCTTTTCGTGGCTATCGAGTCATGTACTTGAACAAGCTTGGAGAGAGATGGCACAGACGCTCACGGAGACTAGTTTTGGTAATGTGAAGGAGTTGATAGAAGCTGAACCTCCTAAATGGTTGGCGGATAGTGCTGCTGCTTCTTGTATGCTCTGCGGTGTGAGGTTTCACCCAATCATGTGTTCAAGGCATCATTGTCGGTTTTGTGGAGGAATATTTTGTGGCGAATGTTCTAAAGGACGGAGCTTGATGCCATCAAAGTTTCGAGTTTCTGATCCCCAAAGAGTCTGCGATGTATGCTTTGTCCGAGTTGAGTCTATACAGCCTTATTTGATGGATCATACCATGGAATATGAAATTTACAAGGCAACTAACACTATCAAGTCTTATAATCAGATAGGTTTAGTAAAGCCCGATAAGACAATTCCAGATGTCATTCTTAGGCAAGCAAAAGGTCTAGCAATTATCACTGTGGCCAAAGTTGGAGTGATGGTTACTTATAATATTGGAACAGGAATTGTGGTTGCACGTAGGGAAGATGGTTCATGGTCTCCACCATCTGCTGTTTCAACATTCGGAATGGGGTGGGGGGCTCAGGCTGGAGGGGAGTTAACAGACTTCATTATTGTTCTGAGAACAAATGATGCTGTCAAGACATTTAGTGGTAATGCACATCTTTCACTTGGAGCTGGTTTAAGTGCTGCTGTTGGCGTTGTTGGAAGGGCAGCTGAAGCTGATATTCGAGCTGGTGATGGCGGCTATGCTGCTTGTTATACTTACAGCTGCAGTAAAGGTGCATTTGTTGGTTGTTCACTTGAAGGAAGTATTGTCACCACTCGCACACAAGAAAATTCTCGTTTTTATGGCAGCCAGTCTTTAACTGCAACAGATATACTTCTTGGCTCCTTGCCTAGGCCACCTGCTGCTGCTATTCTCTACCGAGCTCTCGCAGAATTGTATTTGAAGATTGATGGTTATTAA 1551 0.4178 MEDKNFDSKNHVQVVEDLSDRVSRLSPCDHIFNSYSPLDDEVDGNLRNHHNHVTKENSDSLSSVSTEENNMNLSRLYPELPEESLERNEEDMEALAGIQNQRKYFYYDAPLNEDTGVWIPVSVPPMLEDDHKEWTKGFHSSGGFFPEDDMGWNQYVGGDKELTMWEVLVEILLVARGKVSSLASGDIHTYSFSWLSSHVLEQAWREMAQTLTETSFGNVKELIEAEPPKWLADSAAASCMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLMPSKFRVSDPQRVCDVCFVRVESIQPYLMDHTMEYEIYKATNTIKSYNQIGLVKPDKTIPDVILRQAKGLAIITVAKVGVMVTYNIGTGIVVARREDGSWSPPSAVSTFGMGWGAQAGGELTDFIIVLRTNDAVKTFSGNAHLSLGAGLSAAVGVVGRAAEADIRAGDGGYAACYTYSCSKGAFVGCSLEGSIVTTRTQENSRFYGSQSLTATDILLGSLPRPPAAAILYRALAELYLKIDGY 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10241 516 SUPERFAMILY FYVE/PHD zinc finger 202 294 IPR011011 -
Vifa1g10241 516 SMART fyve_4 225 296 IPR000306 GO:0046872
Vifa1g10241 516 PANTHER SH3YL1 PROTEIN 194 514 - -
Vifa1g10241 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 303 IPR013083 -
Vifa1g10241 516 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 233 295 IPR017455 -
Vifa1g10241 516 Pfam Las17-binding protein actin regulator 383 508 IPR007461 -
Vifa1g10241 516 FunFam Zinc finger family protein 219 301 - -
Vifa1g10241 516 CDD SYLF_FYVE 308 509 - -
Vifa1g10241 516 Pfam FYVE zinc finger 229 295 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10241 Vifa-Chr1 1704746482 1704750241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10241 230 295 EF-hand Containing Proteins AT3G14270 35.211 4.99e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10241 K20523 - gmx:100813648 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10241 1 1704746482 1704750241 Vifa1g10241 1 1704746482 1704750241 ECH