Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09765 ATGGGGATTGTTTCACAGGATGCTCTTAACCAACTCCAGGCTCTTGTAGATCAAGTTGAGGAGCCACTTCAGAAAACGTTTCAGAATGTTCATCAAGGATATGTAATCGAAACCTTGATTCGGTTTCTGAAAGCAAGGGAATGGAATGCTTCAAAGGCTCATAAAATGTTGATTGAGAGTTTGAACTGGAGAGTGCAAAATGAGATCGACAAAATATTATCGAAACCAATAATCCCTCCAGATTTGTACAGAGGTGTGCGCGATTCTCAGCTCATAGGATTGTCAGGGTACTCACGAGAGGGTCTTCCTGTCTTTGCAATCGGTGTTGGACTTAGCACATTTGACAAAGCATCTGTCCATTATTATGTTCAGTCTCACATTCAAATTAATGAATATCGTGATCGTGTAGTCTTGCCTTCCGTGTCGAAGAAGCATGAACGCCCTATTACAACATGTGTAAAGGTTTTGGATATGACCGGTCTGAAGCTGTCAGCTCTGAATCAGATTAAGCTGTTAACAATAATTTCATCCATTGATGATCTGAACTACCCTGAGAAGACAAATACTTATTACATTGTAAATGCGCCGTACATATTTTCAGGTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAGAGGACTAGGAAAAAAGTGCAAGTCTTGCAAGGATGTGGGCGAGATGAGTTGTTGAAGATCATGGATTACGCATCTCTACCGCATTTCTGTAGAAAAGAAGGCTCTGGATCATCGAAACATTCAGGAAGTGGGAGTGAAAATTGTTATTCCTTGGATCATCCCTTCCATCAAGAACTCTACAACTACATCAAGGAACAATCAAGAATTGAAGCTAGGGGGCCAATCAAGCAGGGATCATTTCATGTAGAATTTCCTGAACCTGCTGCCGAGGAAGAAGCGGATATTGCCAAGACTATAGAGTCAGAGATACACAAGTTTGAGAACAATCTTGAAATTGTTGATTGA 981 0.4088 MGIVSQDALNQLQALVDQVEEPLQKTFQNVHQGYVIETLIRFLKAREWNASKAHKMLIESLNWRVQNEIDKILSKPIIPPDLYRGVRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVVLPSVSKKHERPITTCVKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSGCWKVVKPLLQERTRKKVQVLQGCGRDELLKIMDYASLPHFCRKEGSGSSKHSGSGSENCYSLDHPFHQELYNYIKEQSRIEARGPIKQGSFHVEFPEPAAEEEADIAKTIESEIHKFENNLEIVD 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09765 326 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 321 - -
Vifa1g09765 326 Gene3D - 4 289 IPR036865 -
Vifa1g09765 326 CDD SEC14 83 241 IPR001251 -
Vifa1g09765 326 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Vifa1g09765 326 Pfam CRAL/TRIO, N-terminal domain 8 58 IPR011074 -
Vifa1g09765 326 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 239 IPR001251 -
Vifa1g09765 326 SMART sec14_4 79 247 IPR001251 -
Vifa1g09765 326 SUPERFAMILY CRAL/TRIO N-terminal domain 13 76 IPR036273 -
Vifa1g09765 326 SUPERFAMILY CRAL/TRIO domain 81 278 IPR036865 -
Vifa1g09765 326 Pfam CRAL/TRIO domain 90 241 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09765 Vifa-Chr1 1583097225 1583099851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09765 1 320 Acyl Lipid Metabolism Gene Families AT5G47730 76.012 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09765 K26544 - gmx:100793867 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09765 1 1583097225 1583099851 Vifa1g09765 1 1583097225 1583099851 ECH