Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09758 ATGGCTCTTTGCTTAGACGAATTGAAACGATTCTTCGCTGCTGTAGTAAATTGGTGCAATACCGAATTATCAGGCTCGAAACAGCAGCCTAAAGGTTTAAAAAATCCAGAATTAATTGCAAATGAAACGCTGTTTACTGTAAGTGAGGTTGAAGCGTTGTATGAACTATTTAAGAAGATTAGCAGTGCAGTTGATGATGATGGACTGATTACTAAGGAAGAATTTCAGTTGTCCTTGTTCAAGACAAGCAACAAAAGAAGTTTATTTGCTGAGAGGGTGTTTGACTTGTTTGACACACACCACCATGGAGTACTTGATTTCAAAGAGTTTGCATCTGCTTTGTCTGTTTTTCATCCAATTGCATCAATGGATGATAAGATTGACTTTTTATTCAGATTGTATGATCTCAAACATCAAGGACACATTGAGAGGCAAGAGTTGAGACAAATGGTGGTGGCTACTTTAACAGAATCTGGCATGAATCTTTCAGATGCTATGATTAATGGCATCATTGACAAGACATTTGATGAAGTGGACACAAATGATGATGGAAAGATTGACAAAGAAGAATGGCGCACCCTTGTGATGCAGCATCCATCCCTTCTCAAGAATATGACTCTTCATTATCTCACAGAAATCACAACTACATTTCCAAGCTTCATATTTCACTCTACAGTTGATGATAGTTGA 690 0.3754 MALCLDELKRFFAAVVNWCNTELSGSKQQPKGLKNPELIANETLFTVSEVEALYELFKKISSAVDDDGLITKEEFQLSLFKTSNKRSLFAERVFDLFDTHHHGVLDFKEFASALSVFHPIASMDDKIDFLFRLYDLKHQGHIERQELRQMVVATLTESGMNLSDAMINGIIDKTFDEVDTNDDGKIDKEEWRTLVMQHPSLLKNMTLHYLTEITTTFPSFIFHSTVDDS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09758 229 ProSiteProfiles EF-hand calcium-binding domain profile. 166 201 IPR002048 GO:0005509
Vifa1g09758 229 SMART efh_1 89 117 IPR002048 GO:0005509
Vifa1g09758 229 SMART efh_1 126 154 IPR002048 GO:0005509
Vifa1g09758 229 SMART efh_1 170 198 IPR002048 GO:0005509
Vifa1g09758 229 Pfam EF-hand domain pair 67 113 IPR002048 GO:0005509
Vifa1g09758 229 FunFam calcineurin B-like protein 3 35 228 - -
Vifa1g09758 229 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Vifa1g09758 229 SUPERFAMILY EF-hand 36 221 IPR011992 -
Vifa1g09758 229 PRINTS Recoverin family signature 186 206 - -
Vifa1g09758 229 PRINTS Recoverin family signature 140 158 - -
Vifa1g09758 229 PRINTS Recoverin family signature 93 114 - -
Vifa1g09758 229 ProSitePatterns EF-hand calcium-binding domain. 179 191 IPR018247 -
Vifa1g09758 229 ProSiteProfiles EF-hand calcium-binding domain profile. 122 157 IPR002048 GO:0005509
Vifa1g09758 229 PANTHER CALCINEURIN B 28 228 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vifa1g09758 229 CDD EFh 126 196 IPR002048 GO:0005509
Vifa1g09758 229 Gene3D - 35 229 - -
Vifa1g09758 229 Pfam EF-hand domain pair 125 193 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09758 Vifa-Chr1 1581069267 1581071754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09758 1 229 EF-hand Containing Proteins AT5G55990 67.249 1.61e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09758 K06268 - pvy:116105058 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09758 1 1581069267 1581071754 Vifa1g09758 1 1581069267 1581071754 ECH