Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09552 ATGGTGAAGGTGCGTATGAACACCGCCGATGTGGCCGCCGAAGTCAAATGTCTCCGGAGGCTAATCGGAATGCGATGCTCCAATGTCTATGATCTCACTCCCAAGACGTACGTTTTCAAGCTAATGAACAGCAGTGGAGTGTCGGAATCCGGCGAGAGCGAGAAGGTTTTGCTACTCATGGAAAGTGGTGTTAGATTGCATACTACTGTGTATATGCGTGACAAAAGCAACACACCTTCTGGTTTTACACTTAAGTTGAGGAAACATATTCGAACTAGAAGGCTCGAGGATGTGCGGCAACTTGGGTACGATCGGATTGTTCTTTTTCAATTTGGACTTGGGGAGAATGCAAACTATGTTATATTAGAGCTATATGCTCAAGGCAACATCATCCTCACGGATTCTAGTTTCACTGTCATGACTCTGCTTCGATCTCACAGGGATGATGATAAGGGGTTTGCAATCATGTCACGCCATCGTTATCCTATGGAAAGTTGTAGAATTTTTGAACGAACAACAACAACAAAGCTGCAGACAGCCCTGATGTCTTCCAAAGAAGGTGACAATGATGAGGCTGTTAAGTCCAATGGAAATGGAACTGATGTTTCTAATGTAGAGAGAGAGAAACAGGGACCCCGAAAAGGTGGGAAGTCACATGCCACTTTAAAAATTGTTCTTGGGGAGGCACTCGGTTATGGACCTGCACTTTCTGAACATATGATATTAGATGCTGGTTTGGTTCCCAGTGAAAAAGTGCCCAAAGATAAAACTTGGGATGATACCACTATTCAGGCTTTGGTTCAAGCTGTTGCAAGGTTTGAAGATTGGATGCAGGATATCATTTTAGGTGAACTAGTTCCTGAAGGATACATCTTGATGCAAAACAAAAATTTGGGGAAGGATTCTTCTATATCACAACCAGAAAGTGTTAAACAGATCTATGATGAGTTCTGCCCCATTTTACTTAACCAGTTTAAATCAAGGGATCATACAAAGTTTGAGACATTTGACGCAGCTTTGGATGAATTCTACAGCAAAATTGAGAGTCAAAGGTCTGAACAACAGCACAAGGCCAAAGAAAACTCAGCTCTTCAGAAACTTAGTAAGATACGCAACGATCAGGAAAATCGAGTTCACACTTTGAGGAAAGAAGCTGATCACTGTATTAAAATGGCAGAATTGATAGAATATAACTTAGAAGACGTGGATGCTGCTATATTAGCTGTTCGTGTATCTCTTGCTAAGGGTATGAGTTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGAAATCCAGTAGCTGGTCTTATCGACAAGCTCCATCTTGAAAGGAATTGCATGACTATACTGTTAAGCAACAATCTCGATGAAATGGATGATGATGAGAAGACACTGCCTGCTGATAAGGTTGAAGTTGACTTAGCACTCTCGGCACATGCCAATGCTCGGAGGTGGTACGAACAGAAGAAAAAACAGGAGAGCAAACAGGAAAAGACTATAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAGAGAAAGACTCGCCTACAGCTTAGTCAGGAAAAAACTGTTGCCTCAATTTCGCATATGCGCAAAGTTCACTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTAATTATCAGTGGACGCGATGCCCAGCAAAATGAGATGATAGTAAAGCGCTATATGTCAAAAGGAGATCTGTATGTGCATGCTGAACTGCATGGAGCTTCTAGTACAGTTATCAAGAATCACAAACCTTTGCAGCCAGTTCCGCCATTGACCCTAAACCAAGCAGGATGTTTCACAGTCTGCCATAGCCAGGCATGGGATTCAAAAATGGTTACCAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACTGCACCTACTGGGGAATACCTGACTGTAGGGAGTTTCATGATACGGGGTAAGAAAAATTTTCTTCCGCCACACCCTCTTATCATGGGTTTCGGCCTGCTATTTCGCTTGGATGAGAGTTCTTTGGGATCACATTTAAATGAAAGGAGAGTAAGAGGAGAGGAGGAAACAGTAGATGATTATGTTGAAACTGGCCCTGTTGAAGAACAATCTGATTCAGAATCTGAGAAGGATGTTACTGATGGAAAATCTGCTGCAGACTCTGAAAGGAATGATGATTTCTCTGCCAAAGATACAAGTACAACGAATATGCTTGATAGTGAGAAATTGTCTGACATTGGTGGAAATGGCTTAGCATCCGTCTCCCCTCAACTTGAGGAACTTATTGATCGAGCTCTGGGCCTTGGATCTGTTGCCAAATCAAATAAAAGTTATGGAGCTGAGAACACTCAGGTTGATTTAAGCAGTGAGCACTTTATTGAACCGAGCAAACCTGCAGTAAGGGATAAGCCATATATATCGAAAGCTGAGAGAAGAAAGCTTAAAAATGAACCGAAACATGTAGAAGCATATCCAAGTGTTGAACATGGAAAGGACGAATTAAAAACAAAAGACATTTCTGGTAATTTGCATGCAAAAGATGCTCAAAATTTGAAGACAAGAGGTGGTAAAAAAACCAGCCGTGGACAGAAGGGAAAACTTAAGAAGATAAAGGAGAAGTATGCTGACCAAGATGAGGAAGAAAGGAAGATCCGAATGACATTATTGGCTTCTTCTGGAAAACCAATCAAGAAGGAAGAGACATCATTTGGAAATGAAGCATTGGATAAAGGGAAAAAGTCTGACAGTGGTCCTATTGATGCTCCAAAAATATGCTACAAGTGTAAGAAGTTAGGTCATTTATCTCCGGATTGTAAGGAGCAATCAAATGATCTGTTGCACAGTCATGCAACCAGTGAAGCTGAAGAAAATCCAAACATGAGTGCTTCAAACACTTCCTTAGAAGATAGAGTGGCAATGGATGAAGATGATATTAATGAAATAGGAGAAGAAGAGAAAGAAAAGCTAAATGACGTGGATTACTTGACAGGGATTCCACTCCCGAATGACATTCTCTTATATGCTGTTCCTGTATGTGGTCCATACAATGCAGTTCAGTCTTACAAGTATCGAGTGAAGATAATACCCGGACCTGTGAAGAAAGGGAAAGCTGCAAAAACTGCAATGAATTTATTCAGCCACATATCAGAAGCAACAAATCGGGAGAAGGAGTTGATGAAAGCCTGTACCGATCCTGAATTAGTTGCTTCAATTGTTGGAAATGTGAAGATAACTGCAGCTGGACTTACTCAATTAAAGCAAAAACAAAAGAAAGGAAAGAAGAGTGCCAAACAAGGAAGTTAG 3309 0.4122 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHTTVYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIVLFQFGLGENANYVILELYAQGNIILTDSSFTVMTLLRSHRDDDKGFAIMSRHRYPMESCRIFERTTTTKLQTALMSSKEGDNDEAVKSNGNGTDVSNVEREKQGPRKGGKSHATLKIVLGEALGYGPALSEHMILDAGLVPSEKVPKDKTWDDTTIQALVQAVARFEDWMQDIILGELVPEGYILMQNKNLGKDSSISQPESVKQIYDEFCPILLNQFKSRDHTKFETFDAALDEFYSKIESQRSEQQHKAKENSALQKLSKIRNDQENRVHTLRKEADHCIKMAELIEYNLEDVDAAILAVRVSLAKGMSWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTILLSNNLDEMDDDEKTLPADKVEVDLALSAHANARRWYEQKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVASISHMRKVHWFEKFNWFISSENYLIISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPLQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEETVDDYVETGPVEEQSDSESEKDVTDGKSAADSERNDDFSAKDTSTTNMLDSEKLSDIGGNGLASVSPQLEELIDRALGLGSVAKSNKSYGAENTQVDLSSEHFIEPSKPAVRDKPYISKAERRKLKNEPKHVEAYPSVEHGKDELKTKDISGNLHAKDAQNLKTRGGKKTSRGQKGKLKKIKEKYADQDEEERKIRMTLLASSGKPIKKEETSFGNEALDKGKKSDSGPIDAPKICYKCKKLGHLSPDCKEQSNDLLHSHATSEAEENPNMSASNTSLEDRVAMDEDDINEIGEEEKEKLNDVDYLTGIPLPNDILLYAVPVCGPYNAVQSYKYRVKIIPGPVKKGKAAKTAMNLFSHISEATNREKELMKACTDPELVASIVGNVKITAAGLTQLKQKQKKGKKSAKQGS 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09552 1102 MobiDBLite consensus disorder prediction 954 970 - -
Vifa1g09552 1102 Pfam NFACT N-terminal and middle domains 10 161 - -
Vifa1g09552 1102 Pfam NFACT N-terminal and middle domains 222 523 - -
Vifa1g09552 1102 MobiDBLite consensus disorder prediction 705 731 - -
Vifa1g09552 1102 MobiDBLite consensus disorder prediction 682 750 - -
Vifa1g09552 1102 ProSiteProfiles Zinc finger CCHC-type profile. 927 942 IPR001878 GO:0003676|GO:0008270
Vifa1g09552 1102 FunFam nuclear export mediator factor Nemf 6 163 - -
Vifa1g09552 1102 MobiDBLite consensus disorder prediction 941 970 - -
Vifa1g09552 1102 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1078 - -
Vifa1g09552 1102 MobiDBLite consensus disorder prediction 182 217 - -
Vifa1g09552 1102 Pfam NFACT protein C-terminal domain 987 1079 IPR021846 -
Vifa1g09552 1102 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
Vifa1g09552 1102 Pfam Zinc knuckle 926 942 IPR001878 GO:0003676|GO:0008270
Vifa1g09552 1102 MobiDBLite consensus disorder prediction 854 882 - -
Vifa1g09552 1102 SMART c2hcfinal6 926 942 IPR001878 GO:0003676|GO:0008270
Vifa1g09552 1102 Coils Coil 364 384 - -
Vifa1g09552 1102 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09552 Vifa-Chr1 1530288479 1530302573 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09552 K24971 - gmx:100807437 1813.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09552 1 1530288479 1530302573 Vifa1g09552 1 1530288479 1530302573 ECH