Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09550 ATGTTTTTCAGTGGCGATCCCTCCAATCGCAAACGAGTTGATTTAGGTGGGAGAAGTTCCAAGGAAAGGGACAGGAAGAATCTTCTTGAACAGACGCGATTGGAACGGAATCGGCGGTTGTGGCTGCGTCAGCAGAACTCTGCTGCACTCAGGATTCAGAAATGCTTCAGAGGGAAAAGAGTTGTCAGAGCAGAACAGTCTAAGCTACGACAGAAATTCCTTAAAATCTATGGAAAGAACTTCCTTAATGTTGACAGGAAAGTGTTCGGTCCAGATTCTGATTTCCTCCGCCAGTTCCTCTATTTCTTTAATGCAGAAAACCATGATGATTTTTTAGTTCTTGTGCAAATTGGCCGATTGCTTCTACAGTTTGTTCAAGAGAGCGGGGATGCTGTGAGGCTTTTTGCTGTACATCATAATAGAAATCAGTTGAAGGATCAACTTTTATTGACTCCAAAGGAGTCTAATGCATCAGCTATTCCATTATTGGAAGTTTTACTACTTAGAGAAATTGTTCTTACAGGAAAGGGTAATGCAGAAAAATGTATAGGGTCTTCTTTGGAGCGTGTTCTTACAGGTGTGATGTGTCACATTGGTCAGAAGCCATGTATATGTTCAGACACTGATCCAAGATATACCTTCTCATTGCAAATCCTTACAATTCCTTTCTTATGGCATGTTTTTCCAAACCTAAGACAGGTTTTTGCTAGACAAGGCATGGGCCAACATTACATTCATCAAATGGCAACATTTGTGCCAAATTTGATCAGTTTTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGAGTTGCTTTGTCTCAACCTGACTGCCATAGACCTTCAGCTGTTACTACATTTTTACTGGAAGTGCACCCCTCTCTGACAAGACCTGATAGTAGAGAAAATTCTATGATTGCTGAGGATGATGTGACTGGCGATGATGAAGTCATGGAAGTAGCTCTGGATAGGAAATTGGACCAACAAATTTGTAATTCCATAGATACCCGCTTCCTCCTGCAATTGACAAATATATTATTTAGAGATATTTCATCTGCCAATGGGCCAGATGATATGGAGGTTGCAGCTGTTGGTGCAGTTTGCGGGTTTTTATATGTTATCTTCAATACTTTACCACTTGGAAGGATTATGACTGTGCTCGCATACAGAACTGACCTTGTTCCTATGCTTTGGAATTTTATGAAACGGTGCCATGAGAACAAAAAATGGTCATCTTTGTCTGATCAGTTATCATACCTCTCAGGGGATGCCCCTGGTTGGTTGTTACCTCTTGCTGTATTCTGTCCTGTCTACAAGCATATGCTTATGATAGTTGATAATGAGGAATTTTATGAGCAGGAGAAACCCCTATCACTGAAGGATATCAGCAGCCTAATCATTCTGTTGAAGCAGGCTTTGTGGCAGCTACTGTGGGTAAATCACACCTCATCTGCTAGTTCGGTTAGATCTATTCCAGTTAGGACAAGCAGTAAAAAGCTGTCTATTGAAGCCGTTCAACAGAGGGTTAGCATAGTCGTCTCTGAGCTCCTGTCCCAGCTCCAAGATTGGAACAACAGACGCCAGTTTACATCTCCCAGTGATTTCCATGCTGATGGGGTGAATGACTTTTTTATCTCTCAGGCTGTTATAGAAAATGCGCGAGCAAATGAAATTTTAAAGCAGGCCGCTTTCTTGATACCATTTACAAGCAGGGTTAAAATTTTCACTTCTCAACTAGCTTCTGCTAGGCAAAGACATGGATCTCAGGCTGTATTTACTAGAAACCGGTTCAGAATAAGACGTGATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGATGATCTCCGAGGACTGATTCGTGTGACTTTTGTCAATGAGTTTGGAGTTGAAGAAGCTGGAATAGATGGTGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGAGCTTCTTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCGGATCATCTGCTTTATCCAAATCCTGGATCTGGAATGATACATGAGCAACATCTCCAATTTTTCCACTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTCGAAGGAATTCTTGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAGAAGCACAACTATTTGAATGACTTGCCTTCCTTGGACCCTGAATTATATCGGCATCTTATCTTTCTAAAGCGTTATGAGGGTGACATTTCGGAATTGGAACTGTACTTTGTTATATTAAATAATGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACCTGCGCGTCACAAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAATCATCGCTTGAATTCTCAGATACGTCAACAAAGTTCTCATTTCTTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTGCTGATATCAGGATCACTTGACAGCTTGGACGTTGATGATTTGCGGCAGCATACGAATTATGCCGGAAGCTATCATAGTGAGCATGATGTGATTGAGATGTTCTGGGAAGTACTCAAAGGCTTTTCAATGGAAAACCAGAAGAAATTCTTAAAGTTTGTGACAGGTTGCTCTCGAGGACCATTGCTTGGATTCCGATATCTTGAGCCTTTGTTCTGCATACAAAGGGCTGGTGGTAATGCTTCTGAAGATGCTCTGGAAAGATTACCAACAGCAGCTACCTGTATGAATCTGTTAAAACTTCCACCATATAGAAGCAAGGATCAACTCGAATCCAAATTACTGTATGCAATAAATGCTGATGCTGGCTTTGATTTGAGTTAA 2910 0.4045 MFFSGDPSNRKRVDLGGRSSKERDRKNLLEQTRLERNRRLWLRQQNSAALRIQKCFRGKRVVRAEQSKLRQKFLKIYGKNFLNVDRKVFGPDSDFLRQFLYFFNAENHDDFLVLVQIGRLLLQFVQESGDAVRLFAVHHNRNQLKDQLLLTPKESNASAIPLLEVLLLREIVLTGKGNAEKCIGSSLERVLTGVMCHIGQKPCICSDTDPRYTFSLQILTIPFLWHVFPNLRQVFARQGMGQHYIHQMATFVPNLISFLPKDISDEFPTYACLLGNILETGGVALSQPDCHRPSAVTTFLLEVHPSLTRPDSRENSMIAEDDVTGDDEVMEVALDRKLDQQICNSIDTRFLLQLTNILFRDISSANGPDDMEVAAVGAVCGFLYVIFNTLPLGRIMTVLAYRTDLVPMLWNFMKRCHENKKWSSLSDQLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDISSLIILLKQALWQLLWVNHTSSASSVRSIPVRTSSKKLSIEAVQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVIENARANEILKQAAFLIPFTSRVKIFTSQLASARQRHGSQAVFTRNRFRIRRDHILEDAYNQMSQLSEDDLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRASFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKRYEGDISELELYFVILNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNSQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGSYHSEHDVIEMFWEVLKGFSMENQKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEDALERLPTAATCMNLLKLPPYRSKDQLESKLLYAINADAGFDLS 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09550 969 SUPERFAMILY Hect, E3 ligase catalytic domain 598 961 IPR035983 GO:0004842
Vifa1g09550 969 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g09550 969 CDD HECTc 607 967 IPR000569 GO:0004842
Vifa1g09550 969 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 10 969 IPR044611 GO:0000209|GO:0061630
Vifa1g09550 969 FunFam Putative Ubiquitin-protein ligase E3C 733 812 - -
Vifa1g09550 969 FunFam Putative Ubiquitin-protein ligase E3C 851 968 - -
Vifa1g09550 969 Pfam HECT-domain (ubiquitin-transferase) 664 969 IPR000569 GO:0004842
Vifa1g09550 969 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Vifa1g09550 969 Gene3D Hect, E3 ligase catalytic domain 733 812 - -
Vifa1g09550 969 Gene3D Hect, E3 ligase catalytic domains 609 847 - -
Vifa1g09550 969 SMART hect_3 626 969 IPR000569 GO:0004842
Vifa1g09550 969 ProSiteProfiles HECT domain profile. 628 969 IPR000569 GO:0004842
Vifa1g09550 969 Gene3D Hect, E3 ligase catalytic domain 851 968 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09550 Vifa-Chr1 1529609910 1529639466 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09550 K10589 - gmx:100787467 1641.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09550 1 1529609910 1529639466 Vifa1g09550 1 1529609910 1529639466 ECH