Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09538 ATGGATAAACTAGGAGATGGGATTTTTCCAGATGAGGTGGTTATGCAGATTCTTGCTAGGTTACCGGTGAAATCGCTTTTTAGAACCAAAAGTGTGTGCAAATTATGGTATAGGTTGACTTTGGATAAGTATTTCATTCAATTATACAATGATGTTTCTAGGAAGAACCCTATGATTCTTGTTGAGATTTCAGATTCATTATTAGAATCCAAATCTAGCTTAATCTGTGTTGATAGTTTAAGGGGTGTTTTTGAGTTTACGCTCAATTTCATGAACGATCGAGTTAAGGTTCGAGCGTCGTGTAATGGGTTGTTGTGTTGTTCTAGTATTCCTGATATGGGTGTTTACTATGTTTGTAATCCGGTTACGCGGCAGTTTCGGTTGCTTCCTAAGAGTAGGGAAAGGCCGGTGACTCGGTTTTATCCTGATGGTGAAGCTACTTTGGTGGGGCTGGCGTGTGATCCGGGGCATCAGAAGTTCAATGTTGTGCTTGCTGGTAGTCATCGGACTTTTGGTCATAGGCCGGATGGGAAGTTCATATGTTTGGTGTTTGATTCGGAGTTGAATAAGTGGAGGAAGTTGATTTCTTTTCAAGATGAACATTTTACTCATATGAATAAGAATCAAGTTGTTTTTGTTAATAACGCGTTGCATTGGTTGACCGCTAGCTCTAGTTATGTACTCGTGCTTGATTTAAGTTGTGATATTTGGAGGAAGATGTCGTTACCGTATGACCCGATTTCTGGAGCGGGGAATAGGACTTATCTATTGGAGTTAGACAGTTGTTTGTCTGTTATTCAAATTTCAGAAGCATGGATGACTATATGGATGCTGAAAGATTACTGGAATGATGAATGGTGCATCGTGGATAAGGTGAGTCTGAGGTGTATCAAAGGAATGGTCCCGGGCATTTTCCCGATCAGTCAGACGAGTGAATATGTTTTCATGGCAACTCATAAGCAGGTTTTGGTGTATCATCGCAGGAGTCATGTTTGGAAAGAAATGTACGCCGTGAAATATAGCTCAACACTCCCGTTATGGTTTTCAGCACATGCTTATCGCAACACAATGTTCTCTTGTAACTAA 1086 0.4052 MDKLGDGIFPDEVVMQILARLPVKSLFRTKSVCKLWYRLTLDKYFIQLYNDVSRKNPMILVEISDSLLESKSSLICVDSLRGVFEFTLNFMNDRVKVRASCNGLLCCSSIPDMGVYYVCNPVTRQFRLLPKSRERPVTRFYPDGEATLVGLACDPGHQKFNVVLAGSHRTFGHRPDGKFICLVFDSELNKWRKLISFQDEHFTHMNKNQVVFVNNALHWLTASSSYVLVLDLSCDIWRKMSLPYDPISGAGNRTYLLELDSCLSVIQISEAWMTIWMLKDYWNDEWCIVDKVSLRCIKGMVPGIFPISQTSEYVFMATHKQVLVYHRRSHVWKEMYAVKYSSTLPLWFSAHAYRNTMFSCN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09538 361 PANTHER BNACNNG10540D PROTEIN 9 339 - -
Vifa1g09538 361 SMART fbox_2 9 49 IPR001810 GO:0005515
Vifa1g09538 361 Gene3D - 9 44 - -
Vifa1g09538 361 CDD F-box_AtFBW1-like 9 45 - -
Vifa1g09538 361 Pfam F-box domain 10 43 IPR001810 GO:0005515
Vifa1g09538 361 SUPERFAMILY F-box domain 9 57 IPR036047 GO:0005515
Vifa1g09538 361 NCBIfam F-box protein interaction domain 100 325 IPR017451 -
Vifa1g09538 361 ProSiteProfiles F-box domain profile. 3 52 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09538 Vifa-Chr1 1523102584 1523103669 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09538 - - gmx:100811223 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09538 1 1523102584 1523103669 Vifa1g09538 1 1523102584 1523103669 ECH