Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09537 ATGGCTAGGAAAGGTAGTCAACAGAAGAATGGGATTAACCACAAAAAGGGTGTTTCTGGGGGTGTTCTTCCGGGTATGAAAGGTCATGAAGGAGGGCAAGTGAAGGTTTTTCCGGCGGAGGAACTTGCGAATGGCGATCGTGATTTTTCACCGAAAGCATGTGAGTCTAGTTCTGCTGGTGAAGATAATATCAACGAGCGGAAATCTGAGAAGTCTTCACGGAAAGATAAGCAAGGGATGAATGCAAAGCGTGGTCTGGAGGAATCACAATCGTTTGGAAGTAATTCAGATAATGGCAGTGAGAATGGTGAAGTTCCGATACAAGAAGGAAATTGGGGTTTGCCTAGAAGTAATCTAGCGCAACAGAGTATCAAGAGTAGATTGTGCCGTTTAGTGGAAGGTTTACAGTTGAGAAGTATGGTAGAAAATATGGAACTTGCTGATCATGCAGCTATTAGGAGATTAAGGTTGTCGGTATTTTCCATTTTCACCGCAGTTATGGAGTGGTCAGCCAGGCAGAAGCCGTTGTTTGTATCGATTAGAACCACCGTTTTAGAAGCTTATGCTAGTTTCAGAACAAAATTTAAACAGGCATATCCCGTTGTTCTGACGTGGCTCGTGCACTTTGGAAACATAATCCTTCTATTATCGCTGTTTTGGTTGGACTGTGCCGTTCGGGGTACTGATTCATTTGTTCGGATGGGTACAACATCCTTCTTCTCTGTTATATGGTGCAGCATATTCTCCGTGATTAGTATGATAGGGATGCTCAAGTTTCTGGTTGTCCTGGGACTGTCTGCCTTGATTGCGTATTTTGTCGGGTTCGTGCTTGCAATTTTGGTAGTTGCTATCGTTGGAGTTGTTATGTTGTGGTTTTATGGTAGCTTCTGGACAACAGCATTTTTCATCATCCTTGGAGGATTGGCATTTATGTTACGTCATGAACGTGTGGCACTTCTTATCACCACCATCTATTCTGTCTATTGTGCTTGGCTGTACGTTGGGTGGTTTCGCTTGTTCTTGGCTTTTAATTTAGCTTTCGTCTCAAGTGATGTTCTGGTATACTTCCTCAAGAAAAACATAGATCAACAGAGTAGATCGAATCCATTTGAGCAAAGAGCTGGAATGAACAGTCAACCAGGTTTTAGAAATGATGAATCAATGCCTGCTTCATCCTCTGAAAATGGACCATCTACAGATCGAAATGCTGGAGTCCCTTCAACTAGTGGGGCTGATTCTGATGTAACTTCTGAAGATGAAGTTGTTCGATTGTTGAACTGCTCTGATCACTATTCAGCACTGGGCTTCCTACGCTATCAAAGTATAGATGTTTCAGTTCTGAAGCGTGAATATAGAAAGAAGGCAATGTTGGTACATCCAGATAAAAATATGGGTAATGAAAAGGCCGTAGAAGCCTTTAAGAAACTTCAAAATGCATATGAGATTCTAATGGATTCTTTGAAGAGAAAAGCTTATGATGATGAGCTAAGGAGAGAAGAGATTCTTAACGTGTTCAATAGATTTCATAATGCTCCACGCAGGAATAGTAGACACGGGTTCTTTTCTTCCGGATTTGCCCATTCAGACGCAGATGGTGAGGACCCATTTGGCGAATCAAGGCGAATAGCTTGCAAAAGGTGTGGTGGCTTTCATCTCTGGATACACACTAAGAAACAAAAGTCTCGAGCAAGATGGTGCCAGGATTGTCAAGATTTTCACCAAGCCAAGGACGGTGATGGATGGGTTGAACAATCTTCCCAACCTTTTCTTTTTGGCTTATTGCAGAAGGTGGACGCCCCTAATGCTTACGTGTGTGCGGATAGCAAAATATTTGATGCCACTGAATGGTACATCTGTCAGGGTATGAGATGTCCAGCAAATACTCATAAGCCAAGTTTTCACGTGAACACCAGTATAATGACTAAACATAGTTCCACCAAAGGAACTAGCTCTTCAACACCAAGGGGTGGGCGGATGCCAACTCCTCCTAATATGCCAACACCAAATTTTGAAGAAACCATGACTGAGGAAGAATTCGTCGAGTGGTTACAGAATGCGGTACAGTCAGGCGCGTTCGACAATATGAGCGGCGGCTCAGCAACAGAGAGCCCGTCCGCCAAATCTGGAAATGGGATGAAAAGTTCAGCTCCTGGCAATGGTGTCGGTAGCGGCAGCAAAAAGAAGAAAAAAGGAAAAAAGCAATGGTGA 2208 0.4321 MARKGSQQKNGINHKKGVSGGVLPGMKGHEGGQVKVFPAEELANGDRDFSPKACESSSAGEDNINERKSEKSSRKDKQGMNAKRGLEESQSFGSNSDNGSENGEVPIQEGNWGLPRSNLAQQSIKSRLCRLVEGLQLRSMVENMELADHAAIRRLRLSVFSIFTAVMEWSARQKPLFVSIRTTVLEAYASFRTKFKQAYPVVLTWLVHFGNIILLLSLFWLDCAVRGTDSFVRMGTTSFFSVIWCSIFSVISMIGMLKFLVVLGLSALIAYFVGFVLAILVVAIVGVVMLWFYGSFWTTAFFIILGGLAFMLRHERVALLITTIYSVYCAWLYVGWFRLFLAFNLAFVSSDVLVYFLKKNIDQQSRSNPFEQRAGMNSQPGFRNDESMPASSSENGPSTDRNAGVPSTSGADSDVTSEDEVVRLLNCSDHYSALGFLRYQSIDVSVLKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEILMDSLKRKAYDDELRREEILNVFNRFHNAPRRNSRHGFFSSGFAHSDADGEDPFGESRRIACKRCGGFHLWIHTKKQKSRARWCQDCQDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPNAYVCADSKIFDATEWYICQGMRCPANTHKPSFHVNTSIMTKHSSTKGTSSSTPRGGRMPTPPNMPTPNFEETMTEEEFVEWLQNAVQSGAFDNMSGGSATESPSAKSGNGMKSSAPGNGVGSGSKKKKKGKKQW 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09537 735 MobiDBLite consensus disorder prediction 638 670 - -
Vifa1g09537 735 MobiDBLite consensus disorder prediction 367 415 - -
Vifa1g09537 735 MobiDBLite consensus disorder prediction 638 658 - -
Vifa1g09537 735 SUPERFAMILY Chaperone J-domain 424 511 IPR036869 -
Vifa1g09537 735 SMART dnaj_3 428 488 IPR001623 -
Vifa1g09537 735 MobiDBLite consensus disorder prediction 687 721 - -
Vifa1g09537 735 MobiDBLite consensus disorder prediction 685 735 - -
Vifa1g09537 735 Pfam DnaJ domain 429 493 IPR001623 -
Vifa1g09537 735 Gene3D DnaJ domain 417 509 IPR036869 -
Vifa1g09537 735 PANTHER OS03G0832900 PROTEIN 1 735 - -
Vifa1g09537 735 PRINTS DnaJ domain signature 468 488 IPR001623 -
Vifa1g09537 735 PRINTS DnaJ domain signature 451 466 IPR001623 -
Vifa1g09537 735 ProSitePatterns Nt-dnaJ domain signature. 473 492 IPR018253 -
Vifa1g09537 735 ProSiteProfiles dnaJ domain profile. 429 496 IPR001623 -
Vifa1g09537 735 MobiDBLite consensus disorder prediction 84 105 - -
Vifa1g09537 735 MobiDBLite consensus disorder prediction 1 114 - -
Vifa1g09537 735 Pfam Cleavage inducing molecular chaperone 538 636 IPR032843 -
Vifa1g09537 735 CDD DnaJ 429 485 IPR001623 -
Vifa1g09537 735 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09537 Vifa-Chr1 1522916199 1522921633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09537 1 704 Miscellaneous Gene Families AT5G49580 51.469 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09537 K09534 - gmx:100789594 1063.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09537 1 1522916199 1522921633 Vifa1g09537 1 1522916199 1522921633 ECH