Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09536 ATGGAGGCACTCTTCCAGGGTTCTTATCTTCTAACCAAACCTCCAAAAACCGCTATCATGGCAAATTCTCTTCGATTCAACTTCACTTACTTTTCTTCTTCATTTTCATCTTCAGCGCAGTTTTCTATTCAGAATAAACCCAGTTCATTATCACTGGTTACCAATGCTACTAAGAAAGGTAAGAAAGAAGATAGCCATAGCTTTGTACCCAAATTCGGTGAAGTCACTGGGTTCTTCCCTGAATCTGTTCTTCTTAAAAAGAAGGTAGTTGAGGAAGATGGTAAACTTCTTCCGGAGTTTGAAGATGATGATGAAAGAAAACTATACGAATCGTTGACACTTAAAGTGGAAACTGATATGAATGCTGAATTATTGCGCCACTACGAGATTGTTTACTTAATTCATGAGAAGCATGATGAAGAGGTTGCATCTGTCAATGAGAAAATTCAAGACTTTTTGAGGGAGAAGAAAGCAACAGTGTGGAGATTTAGTGATTGGGGTATGAGAAAGTTGGCTTACAAAATACAGAAAGCTAATAATGCACACTACATTTTAATGAACTTCGAGTTGGATGCAAAATATATCAACGAGTTCAAGACTTTGTTGGATAAAGATGAAAGAATCATTCGACATCTTCTGGTAAAGATGGACGAAGCAGTCACTGAAGATTGCCCTCCCCCTATCGAGTTTAGCACAATTGATGATGAAGACGAAGAAGATGATGATGAACTTGACGAATGGGATGACGAAGAGGAAGAGGAAGAGGAAGAGGAAGATGGCTATGATGACGATGACGGAGTAATCATTGTAGACGATGATGATTTGGGAATGTTGACCTGA 840 0.3869 MEALFQGSYLLTKPPKTAIMANSLRFNFTYFSSSFSSSAQFSIQNKPSSLSLVTNATKKGKKEDSHSFVPKFGEVTGFFPESVLLKKKVVEEDGKLLPEFEDDDERKLYESLTLKVETDMNAELLRHYEIVYLIHEKHDEEVASVNEKIQDFLREKKATVWRFSDWGMRKLAYKIQKANNAHYILMNFELDAKYINEFKTLLDKDERIIRHLLVKMDEAVTEDCPPPIEFSTIDDEDEEDDDELDEWDDEEEEEEEEEDGYDDDDGVIIVDDDDLGMLT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09536 279 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 121 235 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vifa1g09536 279 FunFam 30S ribosomal protein S6 125 219 - -
Vifa1g09536 279 Coils Coil 237 264 - -
Vifa1g09536 279 Coils Coil 135 155 - -
Vifa1g09536 279 SUPERFAMILY Ribosomal protein S6 125 225 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vifa1g09536 279 Pfam Ribosomal protein S6 127 215 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vifa1g09536 279 CDD bS6 127 215 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vifa1g09536 279 MobiDBLite consensus disorder prediction 224 279 - -
Vifa1g09536 279 MobiDBLite consensus disorder prediction 229 271 - -
Vifa1g09536 279 NCBIfam 30S ribosomal protein S6 126 217 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vifa1g09536 279 Hamap 30S ribosomal protein S6 [rpsF]. 125 218 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vifa1g09536 279 Gene3D - 121 223 IPR014717 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09536 - - mtr:11416822 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09536 1 1522851605 1522853687 Vifa1g09536 1 1522851605 1522853687 ECH