Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09506 ATGGCTAGTCTGAGATTTTTCTGCGCCTCAAATATTTCCATCTCAATTCAAAACACCGCTAAAGTGGATAAGAAGTGCAATATTCAGAACTTGAAGAGCCTCATCAACACTATTGAATTTCCTTCCATTTCATCAGCATCATCATCAACTCCACTTGAGTCTCTTCAGAGAGGTAATTGGGTGAAACTCATTTGTGGTGCAAGCTTTGAAGATGTTGTGGATATCAGAAATCTCACTTTGGTTTACACTCTCGCTGGAGTTGACTGCATTGATTGTGCTGCTGATGCATCTGTTGTGAGTGCTGTGAATGAAGGGATTGAAGCTGCAAGAGACATCTTATGCGGCCCTAGAAAGCCGTGGGTGATGATCAGTGTCAATGATGATAAAGATCTTCACTTTCGCAAAGCTCAATTTGATCCGGAGGACTGTCCAGCAGATTGTTCAAGGCCATGTGAAAATGTCTGTCCTGCGAATGCAATCTCGTTCCAACAGAAATCTGCTTCGCAAATTTCATATAATACCGAAGCATCAAGACTAACGAAGGATGGTGTCATAACAGAACGCTGCTACGGCTGTGGCCGCTGCCTTCCAGTTTGTCCCTATGATAAAATAAGAGATGTAACATATGTTAGGGATGCTGTTACAACTGCTGATCTGATCAAGAGAAATGATGTTGATGCTATAGAGATACATACAAGTGGAAGGCAGAGTAGACAGTTTGAAGAGCTCTGGCGTGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTAGCAGTTAGCTTACCTAATGTTGGAGATTCAACAATATCCTCTATGAACAAAATGTTGTCGATTATGAAGCCCAATCTTCAAACCTTTAACTTATGGCAGTTAGACGGCCGTCCGATGAGTGGAGATATCGGGAGAGGAGCAACTAAAGAGTCAATAGCCTTTGCTGTTCAATTGGCTAAAGCAAAAGATAGAGCTTCCGGATTTCTTCAACTCGCTGGTGGAACTAATGCTTATACAGTTGAAGGTTTGAAAAAAGAAGGACTCTTTCAAACAACTATTACGGAATACTTGGATCATGAAGAGTCATCAAACAGTACATCTAATCCATCATGTGCTTTGATTAGCGGCATAGCTTATGGTGGCTACGCGCGAAAGATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGCTGCTTCGATCGAGGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCACTTGCTTTGGTTGGACCTGTAAAATGTCGATAA 1278 0.4194 MASLRFFCASNISISIQNTAKVDKKCNIQNLKSLINTIEFPSISSASSSTPLESLQRGNWVKLICGASFEDVVDIRNLTLVYTLAGVDCIDCAADASVVSAVNEGIEAARDILCGPRKPWVMISVNDDKDLHFRKAQFDPEDCPADCSRPCENVCPANAISFQQKSASQISYNTEASRLTKDGVITERCYGCGRCLPVCPYDKIRDVTYVRDAVTTADLIKRNDVDAIEIHTSGRQSRQFEELWRALGDSVENLKLVAVSLPNVGDSTISSMNKMLSIMKPNLQTFNLWQLDGRPMSGDIGRGATKESIAFAVQLAKAKDRASGFLQLAGGTNAYTVEGLKKEGLFQTTITEYLDHEESSNSTSNPSCALISGIAYGGYARKIVGRVLRSMQSQHGGAASIEDHPEHLLLALREALALVGPVKCR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09506 425 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 189 200 IPR017900 -
Vifa1g09506 425 Pfam Iron-Sulfur binding protein C terminal 219 420 IPR021039 -
Vifa1g09506 425 Gene3D - 126 253 - -
Vifa1g09506 425 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED 54 218 - -
Vifa1g09506 425 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 180 209 IPR017896 -
Vifa1g09506 425 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 134 165 IPR017896 -
Vifa1g09506 425 SUPERFAMILY 4Fe-4S ferredoxins 110 205 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09506 - - gmx:100804088 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09506 1 1512966372 1512969134 Vifa1g09506 1 1512966372 1512969134 ECH