Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09477 ATGATCCATCATCACAAAAGCTTGATAACTATACTATTATTAATTTTCACAGTATCATCATTAGTTCAAGGACGAGTACCCTTTGCATGTGATCCAAGAAACGGTTTCACAAGAGGGTACAGATTCTGCAACACAAACATACCAATTCACGTTAGAGTACAAGACCTTATTGGAAGACTTACATTACCTGAAAAGATAAGACTTGTTGTAAACAATGCAATTGCAGTTCCAAGACTTGGTATACAAGGCTACGAGTGGTGGTCGGAAGCTTTACACGGCGTTTCTAACGTCGGTCCGGGGACTAAATTCGGTGGCGCTTTTCCGGGAGCCACTAGTTTTCCTCAAGTTATCACCACCGCTGCTTCTTTTAATCAATCTTTGTGGCTCGAAATTGGTCGGGTTGTGTCTGATGAAGCACGAGCAATGTACAATGGTGGTGCAGCAGGGTTAACTTATTGGAGTCCTAATGTAAATATTTTCCGTGATCCACGGTGGGGCCGTGGCCAAGAGACACCCGGCGAAGACCCTATATTGGCCGCAAAATATGCGGCCAGCTATGTTCAAGGACTACAAGGCAACGGCGCAGGTAACCGGCTTAAGGTTGCAGCTTGCTGTAAACATTACACTGCCTATGACCTTGATAATTGGAACGGTGTAGACAGGTTTCATTTCAATGCCAAGGTGAGTAAACAGGATTTAGCAGACACATATGATGTACCATTCAAGGCATGTGTGTCCGAAGGAAATGTAGCGAGTGTAATGTGTTCCTACAATCAGGTCAATGGCAAACCCACATGTGCTGATCCCGAACTCCTTCGCAACACCATCCGTGGCGAATGGCGCCTCAATGGGTACATAGTATCGGATTGTGACTCAGTTGGAGTTTTCTACGACACCCAACACTACACGAGAACACCTGAAGAGGCTGCAGCCGATGCGATTAAAGCGGGGTTGGATTTAGATTGTGGCCCATTTTTAGCCCTACATACTGATGGTGCTATTAGGCAAGGACTTATGTCTGAAAATGACCTTAACAATGCTTTAGCTAACCTTATTACAGTTCAAATGAGATTGGGTATGTTTGATGGAGAGCCTTCAGCCCAACCATATGGGAATTTAGGCCCAAGAGATGTTTGTTTACCGGCCCATAACGAAGTAGCAGTTGAAGCAGCTAGACAGGGCATTGTTCTTCTGCAAAACAAAGGAAATGCATTGCCATTATCCCCTACACGCTTCCGCAACATAGGAGTCATTGGTCCCAATTCTGATGTAACTGTTACAATGATTGGAAACTATGCTGGTGTGGCGTGTGGTTATACAACACCGTTGCAAGGTATTGCCAGATATGCGAGGACCATTCATCAAGTAGGATGTAGGGATGTGAGTTGTGGTGGGAACCAGCTATTTGGGGAGGCAGAGATAGTAGCAAGACAAGCTGATGCAACAGTATTAGTAATGGGCTTAGACCAGTCCATAGAAGCTGAATTTAGAGACAGGGTTGGGCTTCTTTTACCAGGCCATCAACAAGAGCTAGTGTCTAGAGTAGCTAGGGCTGCGAGAGGCCCGGTTATATTGGTCCTCATGTCTGGTGGCCCTATTGATGTTACTTTTGCTAAAAATGATCCCAAAATTAGTGCTATTCTGTGGGTTGGTTATCCTGGTCAATCTGGAGGAACTGCTATTGCTGATGTTATCTTTGGCAGAACCAACCCAGGAGGGAGGTTACCAAATACATGGTACCCACAAGGTTATTTGAGCAAAGTGCCAATGACAAACATGGACATGCGGCCAAACCCAGCAATAGGGTACCCGGGAAGAACCTATAGATTCTACAATGGCCCAGTAGTATTCCCATTTGGGCATGGGCTAAGTTATTCAAGATACACTCACACCTTAGCACTTGCTCCTAAACAAGTCTCAGTCCCTTATGTATCCCTCCAGGCCCAAGCCTTCACAAACTCAAGTAACAAAGGAATAAAAGTGAGCCATGCAAAATGTGATGAATTGGAAGTAGGTTTCCATGTGGATGTGAAAAATGAAGGGACAATGGATGGAGCCCACACACTTCTAATATTCTCAAAACCACCTAATGGAGTTAAACAATTGGTGAACTTTCATAAGACTTACGTTCCGGCTGGATCAAAGACACGTGTTAAGGTTGGTGTTCATGTTTGTAACCACCTCTCAGTTGTCGATGAGTTTGGGGTTCGAAGAATCCCAATTGGTAAACATGAACTTCACATTGGTGATCTCAAACATTCTATTTTGGTTCAAACTTAA 2280 0.4439 MIHHHKSLITILLLIFTVSSLVQGRVPFACDPRNGFTRGYRFCNTNIPIHVRVQDLIGRLTLPEKIRLVVNNAIAVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPGATSFPQVITTAASFNQSLWLEIGRVVSDEARAMYNGGAAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAAKYAASYVQGLQGNGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVSKQDLADTYDVPFKACVSEGNVASVMCSYNQVNGKPTCADPELLRNTIRGEWRLNGYIVSDCDSVGVFYDTQHYTRTPEEAAADAIKAGLDLDCGPFLALHTDGAIRQGLMSENDLNNALANLITVQMRLGMFDGEPSAQPYGNLGPRDVCLPAHNEVAVEAARQGIVLLQNKGNALPLSPTRFRNIGVIGPNSDVTVTMIGNYAGVACGYTTPLQGIARYARTIHQVGCRDVSCGGNQLFGEAEIVARQADATVLVMGLDQSIEAEFRDRVGLLLPGHQQELVSRVARAARGPVILVLMSGGPIDVTFAKNDPKISAILWVGYPGQSGGTAIADVIFGRTNPGGRLPNTWYPQGYLSKVPMTNMDMRPNPAIGYPGRTYRFYNGPVVFPFGHGLSYSRYTHTLALAPKQVSVPYVSLQAQAFTNSSNKGIKVSHAKCDELEVGFHVDVKNEGTMDGAHTLLIFSKPPNGVKQLVNFHKTYVPAGSKTRVKVGVHVCNHLSVVDEFGVRRIPIGKHELHIGDLKHSILVQT 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09477 759 PRINTS Glycosyl hydrolase family 3 signature 113 132 IPR001764 GO:0004553|GO:0005975
Vifa1g09477 759 PRINTS Glycosyl hydrolase family 3 signature 275 293 IPR001764 GO:0004553|GO:0005975
Vifa1g09477 759 PRINTS Glycosyl hydrolase family 3 signature 201 217 IPR001764 GO:0004553|GO:0005975
Vifa1g09477 759 SMART Fn3_like_2 687 752 IPR026891 -
Vifa1g09477 759 FunFam probable beta-D-xylosidase 2 380 626 - -
Vifa1g09477 759 Pfam Fibronectin type III-like domain 698 750 IPR026891 -
Vifa1g09477 759 FunFam probable beta-D-xylosidase 7 52 367 - -
Vifa1g09477 759 Gene3D - 52 369 IPR036962 GO:0004553|GO:0005975
Vifa1g09477 759 Pfam Glycosyl hydrolase family 3 N terminal domain 107 348 IPR001764 GO:0004553|GO:0005975
Vifa1g09477 759 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 395 628 IPR036881 GO:0004553|GO:0005975
Vifa1g09477 759 Gene3D Immunoglobulins 650 759 IPR013783 -
Vifa1g09477 759 Gene3D - 381 626 IPR036881 GO:0004553|GO:0005975
Vifa1g09477 759 SUPERFAMILY (Trans)glycosidases 41 394 IPR017853 -
Vifa1g09477 759 Pfam Glycosyl hydrolase family 3 C-terminal domain 395 625 IPR002772 GO:0004553|GO:0005975
Vifa1g09477 759 PANTHER SUGAR HYDROLASE-RELATED 20 755 IPR044993 GO:0009044|GO:0045493
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09477 Vifa-Chr1 1503641893 1503647469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09477 5 758 Glycoside Hydrolase AT5G49360 71.990 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09477 - - gmx:100805839 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09477 1 1503641893 1503647469 Vifa1g09477 1 1503641893 1503647469 ECH