Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09453 ATGGGTGTTTTCAATTTTGATGATGAAAAAACTTCTATTGTAGCACCTGCCATACTTTACAAAGCTCTTGTTATTGATGCTGACACTCTTACTCCTAAGATTATTGATGATGTCAAAAGTGTTGAAATTGTTGAAGGAAACGGCGGTGCTGGAACCATCAAAAAAGTCACTTTCGTTGAAGATGGTGAAACCAAGCATGTGTTGCACAAAGTGGAGTTAGTAGATGTTGCTAATTTTGCTTACAACCACAGCATAGTTGGTGGTGCTGGGCTTCCAGACACTGTTGAGAAAATTTCATTTGAGGCTAAATTGTCTGCAGGACCAAATGGAGGATCCGTTGGAAAGCTGAGTGTGAAATACTTCACAAAAGGTGATGATGCTCCTAGTGAAGAGCAACTCAAGAAGGACAAAGCTAAGGGTGATGGTCTTTTCAAGGCCCTTGAGGATTACTGTATTGCTCATCCTGATTACAACTAA 477 0.4025 MGVFNFDDEKTSIVAPAILYKALVIDADTLTPKIIDDVKSVEIVEGNGGAGTIKKVTFVEDGETKHVLHKVELVDVANFAYNHSIVGGAGLPDTVEKISFEAKLSAGPNGGSVGKLSVKYFTKGDDAPSEEQLKKDKAKGDGLFKALEDYCIAHPDYN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09453 158 CDD Bet_v1-like 4 150 - -
Vifa1g09453 158 Pfam Pathogenesis-related protein Bet v 1 family 1 152 IPR000916 GO:0006952
Vifa1g09453 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09453 158 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09453 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09453 158 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09453 158 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09453 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09453 158 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09453 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09453 158 PANTHER - 1 156 - -
Vifa1g09453 158 Gene3D - 2 158 IPR023393 -
Vifa1g09453 158 FunFam Major pollen allergen Bet v 1-A 1 158 - -
Vifa1g09453 158 SUPERFAMILY Bet v1-like 2 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09453 Vifa-Chr1 1498169706 1498170292 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09453 - - mtr:11416844 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09453 1 1498169706 1498170292 Vifa1g09453 1 1498169706 1498170292 ECH
Vifa1g09453 1 1498169706 1498170292 Vifa4g04000 4 1278169968 1278170709 PCT