Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09433 ATGGGTGTCTTTGTTTTCGATGATGAATACGTTTCAACTGTGGCACCACCTAAACTCTACAAAGCTCTTGCAAAAGACGCTGATGAAATCGTCCCAAAGGTAATCAAGGAAGCACAAGGAGTCGAAATTATCGAAGGAAATGGAGGTCCAGGAACCATCAAGAAGCTATCCATTCTTGAAGATGGAAAAATCGACTATCTGCTACACAAACTAGATGCAATTGATGAAGCAAACTTGGGGTACAACTACAGCTTAGTAGGAGGACCAGGGCTACATGAAAGTTTGGAAAAAGTTACATTCGAGACAATTATTGTGGCTGGTTCTGATGGTGGGTCCATTGTTAAGATTTCTGTGAAATATCACACCAAAGGTGATGAAGTTCTATCTGATGCAGTTCGTGATGAAACTAAGGCCAAAGGAACTGGACTTATCAAGGCTATTGAGGGTTACGTTTTGGCTAATCCTGATTACTGA 474 0.4114 MGVFVFDDEYVSTVAPPKLYKALAKDADEIVPKVIKEAQGVEIIEGNGGPGTIKKLSILEDGKIDYLLHKLDAIDEANLGYNYSLVGGPGLHESLEKVTFETIIVAGSDGGSIVKISVKYHTKGDEVLSDAVRDETKAKGTGLIKAIEGYVLANPDY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09433 157 SUPERFAMILY Bet v1-like 3 157 - -
Vifa1g09433 157 FunFam Major pollen allergen Bet v 1-A 1 157 - -
Vifa1g09433 157 Pfam Pathogenesis-related protein Bet v 1 family 3 154 IPR000916 GO:0006952
Vifa1g09433 157 Gene3D - 2 157 IPR023393 -
Vifa1g09433 157 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09433 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09433 157 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09433 157 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09433 157 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09433 157 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09433 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09433 157 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vifa1g09433 157 CDD Bet_v1-like 4 151 - -
Vifa1g09433 157 PANTHER - 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09433 Vifa-Chr1 1495198984 1495199597 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09433 - - gmx:100305867 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09433 1 1495198984 1495199597 Vifa1g09433 1 1495198984 1495199597 ECH