Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09411 ATGGCTGCTTTGAACAAGGAAATGATGCTACTCGTGATCCAGTATCTCGGTGACGAGAACTTGAAGGAAACCATGCACAAGATGGAGCAAGAATCTGGTCTGTTCTTCAATTTGAAGTATTTTGAAGAGAAAATCGTTGCTGGAGAATTGGACGAAGCTGAGAACTACCTCGGGGGCTTCACGAAAATCAGTGAAAGCCGTAACTCTATGAAAATGTTCTTTGAGATCAGGAAGCAAAAGTACTTTGAAGCCTTGGACAGGCATGACAAAGCGACGGCTGTTGATATTCTGGTGAAAGATTTGAAAATCTTCTCAACATCTAATGCAGATGTGTATAAGGAAATAACACATCTTATCACGCTTAACAACTTTAGGGAGAATGAACAGTTATCGCGGTATGGAGATACTAAATCAACCAGAACCATGTTGATGACTGAGCTGAAGAAATTGATTGATGCTAATCCTAGCCTCAAAGATAAGCTTGTGTTTCCTACAGTGCACTCATCGCGGTTGCGACAATTGGTTAATCAAGGTTTGAATTGGCAGCATCAACTGTGCAGGTATCCGAGGCCAAATCCGGAGATCAAAACTTTGTTAACCGACCATGTTTGTTTGACGCCTGGACAAAATGAACCTTGCTCGCCTACTTCGGCTTTTCGTCCTGCTGCATTTGGTCCAAATCATCTCTCTTATGGAGTTGCACCACTTCATCTAGTCCCTACAGTTCCTACTGCTAATTCTGTAGCGGCATGGTTGGCGAATGCAAACCCTTCCTCATCATCCCAATCGCCTGCTGCGGTCGCAGGTTTCTCATTGCCTGGTCCTTCTAATGGAGTCTCCGTTTTTAACAATTCAAGAACGCGGACTAATCTTACACTGGTGGATCACCAAAGTCCCGATCTGGATCAACGAATGAGATTGTTTCCAAATAACAACTCTTTACAGGCTGTGCAGGCCGCGTATACCTTTACATCTCCACCAATGCCTAAGTGGCATGATGAACTTCCTAGAACCGTCTTTTGTAAGTTACATCAGGGATCAACTGTGACAAGCATGGAGTTTCATCCTTCTCGTCATTCGATACTAGCTGTTGGTAGTGCAAGTGGTGAAATTTCACTTTGGGAAACAAAACATAGAGAGATGATGATAACTAAGCCTTTCAAAATATGGAAACTTTCTAACTGTTCGGTCCAATTTCAGGCTGCGAGTTTTAAAGAAGTGATGATATCTGTCAACCGTGTATCATGGAGCCCGGACGCTAGTTTTATCGGGATTGCTTTTGCCAAACATTTGGTTCATTTGTATACGTATCAAGTTCCTAATGGCCTACAGCAGCAATTGGAGATTGATGCTCATGATGGTTCTGTCAATGACATAGCTTTTACATATCCGGAAAATCAGCTATGCATTGTAACTTGCGGAGATGATAAATTAATTAAGGTATGGGATTTGGATGGTCATAAGATCCATTGCTTTGAAGGTCATGAAGCACCTGTTTGTTCGCTTCTTCCTCGCTCGAAGGAAAATATTCAGTTCTTATTTTCGACTTCGGCTGACGGGAAAGTTAGAGCTTGGATGTACGATGACAAGAGTTTCCATCTGGAGTACGACACTCCCGGAAAATGTTCCACCACACTGATCTATAGTGCTGATGGAACTAGATTGTTTTCTTGTGGAACAAGTAAAGATGGAGATAACTTCTTAGTTGAGTGGAATGAAAATGATGGATCGGCAAAAAGAACATATTCTGGACTTACAAACAAAGCTTTCGGTACTGTGCAATTCGATGCTTCAAAGAATCGGTTTCTTGCTGCTGGTGCAGACAACCAGATCAAGTTTTGGGATGTGGATAGTACCAATGTTCTGACTGAAATAAATGCTGATGGTGGTCTTCCAAATCTTCCTCGCTTGAAGTTCAATAAGAAAGGAGATCTGCTTGCTGTTAGTACAGCAGATGGCGGTATAAAAATTCTTGCTAACACAGACGGTTTCAAATCCATGAGGGGCGTCGATGCTTCTGATCCAAAGTGTGGAGTAAATGTTATTATAGCTAGAAGCATGGAGATTAACAGAAGCTTTGAAACCGTTCACTCTCTTCAATGTCAAATAGTTACTATGTCGGAAAGAGTGGTTCCAAGTAAGAAGGCTATTCGTCTTCTTTACACAAACGATGGAAAGTGTCTTCTAGCTCTTGGTTCAAGAGGGAGTAAGAAGATGTGGAAATGGACCCCTGATGAATTGAATCCTACTGGAAAGGCGACGGCAAGTGTTGTTCCTGAACATTGGTCACCGATTAATGGTATTCGTTTGACCGATGAGTTCCCGACCACTTGTGATTCGGAAACTCCATGTCTGGACATCTCAAAGAATGATAACTATGCCATTGCTTCATATGGAGGAGAAGTTGCATTGTTCAACATGGTGTCTTTTAAGGTTTTGTGTCGTTTTGAGGGACCTCCGCCATCTGCAACGTTTCTCGCATTTAATCCTCAAGACAATAACATCGTCGCAGTTGGAATGGAAAATTCGGATATTCATATTTTTAATGTTAGGTCCGATGAGCGTATATCTATATTGAAGGGTCACTTTAAGCACATTACTGGTATAGCTTTTTCGCATCAACTGAATATAATGGTTTCTTCGGGCGCTGATGCTAAGGTTGTCACATGGTTCACAAGGCCATGGTTTAAGAAGAAATCGGTGATCCTCCAAAGGCCGGGTGGTGGACAATCACGTTTAGGCGAGACTAAAGTTCAATTTCACATTGATCAAACAATGTTGCTGGTATACCATGACTCACAGATAGCAATATATGATGCCTCGAAAATGGAATTGATTATCCAGTGGCCACCACAAGATGGATTGTCTGGTACCATAACCTCTGCAGCATACAACTGCAATGGACAAATAATTTATGCTACTTTCAGTGATGGAAATATTGGAATATTTGGTGCTGAAAATCTCCAACTAAGATATCGTATCGATTCATCTGCATACCTATACCAGACTACATCAACCAGCCAAAATATATATCCTATTGTTGTCACAGCACATCCAGAAAAGCCGTATCAATTTGCAATTGGACTGAATGATGGGTATGTGAAGGTTATAGAGCCTATCGACTCAGCAGGATGGTTGAAACAGAAAGTGCCAACTGTTAAAATGGATATCATCTGA 3177 0.4164 MAALNKEMMLLVIQYLGDENLKETMHKMEQESGLFFNLKYFEEKIVAGELDEAENYLGGFTKISESRNSMKMFFEIRKQKYFEALDRHDKATAVDILVKDLKIFSTSNADVYKEITHLITLNNFRENEQLSRYGDTKSTRTMLMTELKKLIDANPSLKDKLVFPTVHSSRLRQLVNQGLNWQHQLCRYPRPNPEIKTLLTDHVCLTPGQNEPCSPTSAFRPAAFGPNHLSYGVAPLHLVPTVPTANSVAAWLANANPSSSSQSPAAVAGFSLPGPSNGVSVFNNSRTRTNLTLVDHQSPDLDQRMRLFPNNNSLQAVQAAYTFTSPPMPKWHDELPRTVFCKLHQGSTVTSMEFHPSRHSILAVGSASGEISLWETKHREMMITKPFKIWKLSNCSVQFQAASFKEVMISVNRVSWSPDASFIGIAFAKHLVHLYTYQVPNGLQQQLEIDAHDGSVNDIAFTYPENQLCIVTCGDDKLIKVWDLDGHKIHCFEGHEAPVCSLLPRSKENIQFLFSTSADGKVRAWMYDDKSFHLEYDTPGKCSTTLIYSADGTRLFSCGTSKDGDNFLVEWNENDGSAKRTYSGLTNKAFGTVQFDASKNRFLAAGADNQIKFWDVDSTNVLTEINADGGLPNLPRLKFNKKGDLLAVSTADGGIKILANTDGFKSMRGVDASDPKCGVNVIIARSMEINRSFETVHSLQCQIVTMSERVVPSKKAIRLLYTNDGKCLLALGSRGSKKMWKWTPDELNPTGKATASVVPEHWSPINGIRLTDEFPTTCDSETPCLDISKNDNYAIASYGGEVALFNMVSFKVLCRFEGPPPSATFLAFNPQDNNIVAVGMENSDIHIFNVRSDERISILKGHFKHITGIAFSHQLNIMVSSGADAKVVTWFTRPWFKKKSVILQRPGGGQSRLGETKVQFHIDQTMLLVYHDSQIAIYDASKMELIIQWPPQDGLSGTITSAAYNCNGQIIYATFSDGNIGIFGAENLQLRYRIDSSAYLYQTTSTSQNIYPIVVTAHPEKPYQFAIGLNDGYVKVIEPIDSAGWLKQKVPTVKMDII 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09411 1058 SMART ctlh 34 92 IPR006595 -
Vifa1g09411 1058 Pfam WD domain, G-beta repeat 445 483 IPR001680 GO:0005515
Vifa1g09411 1058 Pfam WD domain, G-beta repeat 856 890 IPR001680 GO:0005515
Vifa1g09411 1058 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 485 IPR001680 GO:0005515
Vifa1g09411 1058 Gene3D - 912 1050 IPR015943 GO:0005515
Vifa1g09411 1058 SUPERFAMILY WD40 repeat-like 340 740 IPR036322 GO:0005515
Vifa1g09411 1058 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 859 890 - -
Vifa1g09411 1058 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Vifa1g09411 1058 Gene3D - 680 906 IPR015943 GO:0005515
Vifa1g09411 1058 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1048 IPR027728 GO:0006355
Vifa1g09411 1058 Gene3D - 542 674 IPR015943 GO:0005515
Vifa1g09411 1058 Gene3D - 275 541 IPR015943 GO:0005515
Vifa1g09411 1058 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vifa1g09411 1058 ProSiteProfiles Trp-Asp (WD) repeats profile. 859 890 IPR001680 GO:0005515
Vifa1g09411 1058 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Vifa1g09411 1058 SUPERFAMILY WD40 repeat-like 719 1039 IPR036322 GO:0005515
Vifa1g09411 1058 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 624 IPR001680 GO:0005515
Vifa1g09411 1058 SMART WD40_4 485 526 IPR001680 GO:0005515
Vifa1g09411 1058 SMART WD40_4 403 436 IPR001680 GO:0005515
Vifa1g09411 1058 SMART WD40_4 852 891 IPR001680 GO:0005515
Vifa1g09411 1058 SMART WD40_4 336 375 IPR001680 GO:0005515
Vifa1g09411 1058 SMART WD40_4 809 849 IPR001680 GO:0005515
Vifa1g09411 1058 SMART WD40_4 942 984 IPR001680 GO:0005515
Vifa1g09411 1058 SMART WD40_4 575 615 IPR001680 GO:0005515
Vifa1g09411 1058 SMART WD40_4 618 659 IPR001680 GO:0005515
Vifa1g09411 1058 SMART WD40_4 442 483 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09411 Vifa-Chr1 1488138989 1488144650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09411 331 559 Miscellaneous Gene Families AT5G08390 28.870 2.61e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09411 - - psat:127073516 1869.36