Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09365 ATGAAGTTTCCACTCTTTTTCATTTCACTCTATGCTCTCTCTTTCTTCCCAATATCTTATTCCACAGATAGATCAGAATTGCCTATGATTGCTTTCAGTTGGTGGGATGATATAGGTAGATTTAGAAGTGGTGAAACAGCAACCATCAAGGTTAAAGTACTTGAGAATGGTGATAAAATTGATACCAATATCTTCCATCCCATTCTTACTGTCAATGGAAAGGAAGGAAATAGTTCCTATGTATCCACCGTCTTGTCCCATTTCAAAGGAGACTTTGATAATTGGAAGATTTCCTTCACTCCCATTAGGGTTGGATTGTTCAATATCCTCATTGATGAAGATCGTTACAAAGTTTCTGACTCGTCGTTGCATTTCCAAGTTGAACCAGGGAACATGTATGTGTTTGTTAGCTCTACGGCGGTAATTATCAATGATGACACTATTATATTCAATGAAGGAGAGAATGATGCTTTGTGGAGTTTGAAGGCCATCCTTAAAGGCTCCGAGTTAATATCCGGATTGAAAGTCAACTTTTGTTCTTTGCCTTTTAAACTTTTGGGTGTGATTGTGGGTGATAGCCCTGGGAAGGAGTCTATGTGGAAGGAAGTGAGCACCGAAGAAGGTGTTAAAAGAAATCCGAAGCATTCAAAGCAGATTTCTATGGAGGGGGTGGAAGGTAAAAGATACTTTCATTGGTTCCTGGACCAGAAATCAGATTCTGTCGAAAGCTTTTCCGGAGTTATACGCGAAGGTTGTTGTTCCATTTATGATTGTGGCAGAGGCGGGTCATTGGGATCAGGATATTTGGAGCTGGAACCCAGAATTCTGGAAGTCCCATACGAGCTCGTTTGGACTGAGGATCCGGGAGAGGGTTTCTCTGTGAGATCTTGCGCGGAGTTTCTTCGGACTAGGGATATTAGGGCTGAGTTGAATCAAGGGGTAAGGGAGGCTTTATTCTTTCTGTGGAAATTGAGTGCTCCTTCAAAGGATGTTTGGTTGAAGATTTTTGCTAGCAGATTACCTATTAGAGATCAATTGCGTAGAAGAAGAATAGTGGTGAACGACCGGGATAGTTGTTGCATGTTTTGCTTTAGGGAAGAAGAAAATTTTAGTCACCTCTTCGACACGTGCAATTTTACGAGGAGAATATGGGATAAGGTGGTTGAGTGGATTGGGGGAGATGTGGATTTAAGCGCGGAAGAGTTGAGCGATGGTGTGGAATATTTGGTTGATGAAGAATGCGATTATGTTAAACATTTTCGATCATTTTTGTGTCTTGGAAATGGTTTTGATCTGTTAATGTTTCCTCTGCCTATTGTAATGACCAAAGCGGGAAACTTCTCTTTGCGCATCAAAGGAGGAAATCAAACCTTGAACGGTTCTCCCTTACCGTTAAAAGTGAATTCAGAAGTTATAGATGTCTCTAAATGTGTAGCTAAATGGAAAATTGAACATCATGCATGGCAATTGTCTTCAAAGATGGAGATCTTTATACATCAGTTGGATCAATACGGAAATCTGGTTTCAGTACTGTATCCATTTGACGTTGAAGTCGTTGAGAGAGACACAAATTTGTCGATACCGGGAGTGAAATGGACTCAGGAGTGA 1608 0.4073 MKFPLFFISLYALSFFPISYSTDRSELPMIAFSWWDDIGRFRSGETATIKVKVLENGDKIDTNIFHPILTVNGKEGNSSYVSTVLSHFKGDFDNWKISFTPIRVGLFNILIDEDRYKVSDSSLHFQVEPGNMYVFVSSTAVIINDDTIIFNEGENDALWSLKAILKGSELISGLKVNFCSLPFKLLGVIVGDSPGKESMWKEVSTEEGVKRNPKHSKQISMEGVEGKRYFHWFLDQKSDSVESFSGVIREGCCSIYDCGRGGSLGSGYLELEPRILEVPYELVWTEDPGEGFSVRSCAEFLRTRDIRAELNQGVREALFFLWKLSAPSKDVWLKIFASRLPIRDQLRRRRIVVNDRDSCCMFCFREEENFSHLFDTCNFTRRIWDKVVEWIGGDVDLSAEELSDGVEYLVDEECDYVKHFRSFLCLGNGFDLLMFPLPIVMTKAGNFSLRIKGGNQTLNGSPLPLKVNSEVIDVSKCVAKWKIEHHAWQLSSKMEIFIHQLDQYGNLVSVLYPFDVEVVERDTNLSIPGVKWTQE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09365 535 Pfam zinc-binding in reverse transcriptase 292 384 IPR026960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09365 Vifa-Chr1 1480063666 1480066528 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09365 - - mtr:11416683 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09365 1 1480063666 1480066528 Vifa1g09365 1 1480063666 1480066528 ECH