Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09362 ATGCTTGCTCAAGAGAAATCCCAAAAGATATACCCGACAACTGCTGAGGTAGTGGAGGAGCTAAAGAGAATGGTGGACATAGGCTTCCCAATAGCAGCCATGAGCCTAGTAGGATATCTCAAAAACATGATCTTAGTTGTATGCATGGGAAAGTTGGGAAGCCTTGAGTTAGCAAGTGGTGCTTTAGCCATAGGCTTCACCAACATAACCGGTTACTCAGTCCTTTCAGGTCTAGCCATGGGAATGGAGCCTCTATGTACTCAAGCCATTGGTTCACAAAACTTCTCCTTAGTCTCTCTCATATTAAGAAGAACAATCCTCATGTTATTACTAGCTTCCTTACCTATTTCACTTTTGTGGCTCAATCTCGAACCATTCATGCTATGCCTTCACCAAAATCAAGACATAACAAGAATAGCAAGCCTATATTGCCGCCTCTCGGTCCCCGATCTTATAGCGAATAGCTTCCTTCACCCGATTCGGATCTATTTACGCAGTAAAGGTACAACTTGGCCATTATTGTGGTGCACTTCACTTTCCATTCTCATTCACATCCCTTTTGTGATTTTTTTAACCTTCAAACTTCACCTTGGTGTGCAAGGTATTGCTATTTCAGCTTTCGTTGCAAATTTCAACACCCTTTTCTTTCTTTTATCATACATGTTCTACATGCATGTCTCGAAGGTTTCAATTTCCATACATAACCCTACCCCTCCCTTGTTACAAGAAAAACCAACAAGTGTTAAAACCCTAGGAAAAGAATGGAGCATGTTAATAAGGTTTTCTATTCAAAGTTGTCTTGGAGTGTGCTTAGAATGGTGGTGGTATGAATTCATGACAATTCTAGCTGGTTACCTTTATAACCCTCGTGTAGCTTTAGCTACGGCTGGAATAGTGATACAAACAACATCACTTATGTACACTTTACCGACCGCACTCAGTGCGTCGGTATCAACAAGAGTAGGAAATGAACTTGGAGCTGGTCAACCAGCAAAAGCAAATCTGTCAACAATGGTAGCAATAGGAATGGCACTAGCAAGTTCAACATTGGGACTATTATGGACAACATTGGGAAGAGAAAAATGGGGGAAAGTGTTCACAAATGACAAAGAGATTTTGGAATTGACAATGGTTGTTTTACCTATAATTGGTGTTTGTGAGTTAGCAAATTGTCCACAAACAACAAGTTGTGGAATACTTAGAGGGAGTGCAAGGCCAGGTATTGGGGCAGGGATAAATTTTTATTCATTTTATCTTGTGGGGGCGCCAATAGGAATAGTGTTGGGGTTTGTTTTGAAATTAGGGTTGGTGGGGTTTTGTTATGGTTTGTTGGCAGCACAAATTGCATGTGTGGTTTCAATTCTAGTTGCGGTATATAACACTGATTGGGAAAGAGAGTCATTGAAAGCAAAAAACTTGGTGGGTAAAGGTGGTTCATGTGACACATTATTTGCACATGTTGCTGTTCAAGACCAAACAGTCAAGTGTGAGCAAGGTATTGTCTTTCTCAACGACAACAAGTGA 1524 0.4075 MLAQEKSQKIYPTTAEVVEELKRMVDIGFPIAAMSLVGYLKNMILVVCMGKLGSLELASGALAIGFTNITGYSVLSGLAMGMEPLCTQAIGSQNFSLVSLILRRTILMLLLASLPISLLWLNLEPFMLCLHQNQDITRIASLYCRLSVPDLIANSFLHPIRIYLRSKGTTWPLLWCTSLSILIHIPFVIFLTFKLHLGVQGIAISAFVANFNTLFFLLSYMFYMHVSKVSISIHNPTPPLLQEKPTSVKTLGKEWSMLIRFSIQSCLGVCLEWWWYEFMTILAGYLYNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNELGAGQPAKANLSTMVAIGMALASSTLGLLWTTLGREKWGKVFTNDKEILELTMVVLPIIGVCELANCPQTTSCGILRGSARPGIGAGINFYSFYLVGAPIGIVLGFVLKLGLVGFCYGLLAAQIACVVSILVAVYNTDWERESLKAKNLVGKGGSCDTLFAHVAVQDQTVKCEQGIVFLNDNK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09362 507 CDD MATE_eukaryotic 20 469 IPR045069 GO:0042910|GO:1990961
Vifa1g09362 507 NCBIfam MATE family efflux transporter 30 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g09362 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 15 463 - -
Vifa1g09362 507 Pfam MatE 266 426 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa1g09362 507 Pfam MatE 30 188 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09362 Vifa-Chr1 1479203753 1479205577 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09362 K03327 - gmx:100785533 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09362 1 1479203753 1479205577 Vifa1g09362 1 1479203753 1479205577 ECH