Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09350 ATGGAAGGTAACAAAGACGAAGCATTGAGATGCATCCGAATCGCCGAAGAAGCGATTGCTTCTGGTAACAAAGATCGCGCTCTCAAATTCATGAAAATCGCTAAACGTTTGAATCGCGATTTATCGCTTGATTCCTTGTTCACAAAGTGCGAACGGCTCCATTCTCAGTCCGCCGCCTCTTCCTCCGGCGTCGGCACCTCGGATAAACCGGGGAGAACTAGAGACGTTGGTTTGAATGTAGAGAGGACTTACACGGAGGAGAATGTTAACTTGATTAGGGAACTTAAAGGGAAAAGTGATTACTATTCGATTTTAGGTTTGGAGAAGAGTTCATCTGTTGAAGAGATTAGGAAGGCTTATAGGAAACTGTCTCTGAAGGTTCATCCTGACAAGAATAAAGCGCCGGGTTCTGAAGACGCGTTCAAGAAAGTTTCTAAGGCTTTTAAGTGTTTGAGTGATGGTGATTCTAGACGAGAGTATGATCAAGGAGGGTTGGTGGATGAATTTGATTCGAATTATAATCAGCAAAATAGTTATAGGCGGAGGAGGAGAAGGAATACTACGAGTCATGATGTTTTCGAAGAGGAATTTGATCCGAATGAGATATTTAGAGCTTTCTTTGGACAGCCTGATGTGTTTGGGAGGAGAAATCATGTTTATACGACTCGTGGAGGTGGTGGAATGGGTAATCAACATCAGAGGCGTGAGGTTCAGGGTGGAGGAGGACATTATCTTATGCTGATGATTCAGCTTCTGCCATTGTTGATCATTCTGTTGCTTGCTTACATGCCCTTTTCGGATCATGTATATTCCTTGCACAAGAATCAGTCCTACCAGATTCCAAAGGTGACGGAGGATTATGGGGTTCAGTTTTTCGTGAAATCTCAGGCGTTTGATGCTAATTATCCGATTGGTAGTTCGGCTCGAAAGACCATTGAGGATAATATTATAAAGGATTATAGGAATATGCTCCGTCGTTATTGTCAAGTGGAAATTCAGAGGCGTACTTGGAATAGGAATCTGCCTGTTCCTCACTGTGAAAAGCTTCAAAATTTTGGTGTTCTAGTTTGA 1071 0.4267 MEGNKDEALRCIRIAEEAIASGNKDRALKFMKIAKRLNRDLSLDSLFTKCERLHSQSAASSSGVGTSDKPGRTRDVGLNVERTYTEENVNLIRELKGKSDYYSILGLEKSSSVEEIRKAYRKLSLKVHPDKNKAPGSEDAFKKVSKAFKCLSDGDSRREYDQGGLVDEFDSNYNQQNSYRRRRRRNTTSHDVFEEEFDPNEIFRAFFGQPDVFGRRNHVYTTRGGGGMGNQHQRREVQGGGGHYLMLMIQLLPLLIILLLAYMPFSDHVYSLHKNQSYQIPKVTEDYGVQFFVKSQAFDANYPIGSSARKTIEDNIIKDYRNMLRRYCQVEIQRRTWNRNLPVPHCEKLQNFGVLV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09350 356 SUPERFAMILY Chaperone J-domain 97 208 IPR036869 -
Vifa1g09350 356 Gene3D DnaJ domain 97 218 IPR036869 -
Vifa1g09350 356 PRINTS DnaJ domain signature 102 120 IPR001623 -
Vifa1g09350 356 PRINTS DnaJ domain signature 120 135 IPR001623 -
Vifa1g09350 356 PRINTS DnaJ domain signature 136 156 IPR001623 -
Vifa1g09350 356 SMART dnaj_3 99 156 IPR001623 -
Vifa1g09350 356 ProSiteProfiles dnaJ domain profile. 100 164 IPR001623 -
Vifa1g09350 356 Pfam DnaJ domain 100 161 IPR001623 -
Vifa1g09350 356 CDD DnaJ 100 153 IPR001623 -
Vifa1g09350 356 Pfam Domain of unknown function (DUF1977) 267 336 IPR015399 -
Vifa1g09350 356 PANTHER AT29763P-RELATED 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09350 Vifa-Chr1 1476712330 1476713400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09350 66 162 Miscellaneous Gene Families AT1G16680 30.841 2.90e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09350 K09518 - gmx:100820432 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09350 1 1476712330 1476713400 Vifa1g09350 1 1476712330 1476713400 ECH